Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq72952 118 7e-22 seq6456 114 8e-21 seq91968 100 2e-16 seq57945 98.7 6e-16 >seq72952 Length=1956 Score = 118 bits (130), Expect = 7e-22 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| || ||||| ||||| ||||||||||| |||||||| || Sbjct 1248 CCACCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATATTATAATCAGAT 1307 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| |||||||| || ||||| || | | ||||||||| || || Sbjct 1308 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGGTCTGGGGGA 1367 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC--TTCGCTCTCC 34656 | || || |||||| |||| |||| || ||| | ||| ||||| | | ||| Sbjct 1368 ATACCTTCTTTGTCTTGGATC-TTTGCCTTCACGTTTTCAATAGTGTCAGATGGTTCT-- 1424 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||| || ||||| || || | || || ||||| |||||||| Sbjct 1425 ACCTCTAGGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1474 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| || ||||| || ||||| || ||||||||||| ||||| ||| Sbjct 1476 CCACCACGAAGACGTAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAA 1535 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| ||||| ||||| || | |||||| || || || || Sbjct 1536 AGAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 1595 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||| |||||| ||| || ||||| | ||| || || | |||||| Sbjct 1596 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1655 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || |||| ||||| |||||||||||||| Sbjct 1656 TCTAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1702 Score = 95.1 bits (104), Expect = 8e-15 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | ||||| || || ||| ||| || || || || ||||| || Sbjct 564 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAATCAGAC 623 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||| ||||| ||||| || | |||||||||||| || || Sbjct 624 AAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAAATGAGACGCTGTTGGTCTGGGGGA 683 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC--TTCGCTCTC 34655 | || ||||| | |||| || ||| | || || | |||||||| | | ||| Sbjct 684 ATGCCTTCCTTATCCTGT-AT-TTTAGCCTTCACATTCTCGATTGTGTCAGATGGTTCT- 740 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || || || || ||||| ||||||||||| || ||||| Sbjct 741 -ACTTCCAGGGTAATGGTCTTTCCTGTTAATGTTTTCACAAATATTTGCAT 790 >seq6456 Length=2491 Score = 114 bits (126), Expect = 8e-21 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||||||||| || || ||||| ||||| || | |||||||||||||| || ||||| Sbjct 1021 TCCTTTTGAATATTGTAGTCTGACAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAA 1080 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 || | | ||||||||| || || | || ||||| ||| ||| ||||| |||||| Sbjct 1081 ATAAGCCTCTGTTGGTCTGGGGGAATCCCTTCCTTATCT-TGAATTTTTGCTTTAACATT 1139 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | |||||| || ||| ||||| | || || || || ||||| | |||||||| Sbjct 1140 TTCAATTGTATCAGAAGGCTCAACTTCAAGAGTAATAGTCTTGCCGGTAAGTGTTTTCAC 1199 Query 34695 AAAAATCTGCAT 34706 |||||| ||||| Sbjct 1200 AAAAATTTGCAT 1211 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||||||||||||||| || | ||| ||||| ||||| ||||||||||| Sbjct 1897 CCACCCCTAAGACGCAACACCAAGTGCAAAGTTGATTCCTTCTGAATATTATAATCTGAC 1956 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| || ||||| || | | ||||||||| || || Sbjct 1957 AGCGTACGACCATCTTCTAGCTGTTTCCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGGA 2016 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || || |||||| ||| ||||| ||||| | ||||| || ||| |||| Sbjct 2017 ATCCCTTCTTTGTCT-TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCT-TCCA 2074 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||| || || | || || |||||||| ||||| Sbjct 2075 CTTCTAATGTAATTGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 2123 Score = 107 bits (118), Expect = 1e-18 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| || || ||||| || ||||| || | |||||| | ||||||||||| Sbjct 781 TGGAGAGTAGATTCTTTCTGAATATTGTAATCAGATAATGTTCGTCCATCTTCAAGTTGC 840 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||||||||| || || | ||||||||| || || | || || ||||| ||| ||| Sbjct 841 TTACCGGCAAAAATCAACCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTC-CTGAATTTT 899 Query 34624 TGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 || ||||| | ||||| || ||| || ||||||| || || ||||| || | Sbjct 900 TGCCTTAACATTTTCTATTGTATCAGAAGCT-TCTACTTCCAATGTGATAGTTTTGCCAG 958 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | ||||||||| ||||| ||||| Sbjct 959 TCAGCGTTTTCACGAAAATTTGCAT 983 Score = 105 bits (116), Expect = 4e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || |||||||| || || || | ||| ||||||||||| |||||||| || Sbjct 1213 CCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCAGAC 1272 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||||| ||||| || || | | ||||||||| || || Sbjct 1273 AGAGTGCGTCCATCTTCTAACTGTTTGCCGGCGAAAATCAGCCTCTGTTGGTCTGGAGGA 1332 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || |||||||| ||| ||||| ||||| | ||||| || ||| |||| Sbjct 1333 ATGCCTTCCTTGTC-CTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCT-TCCA 1390 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || ||||| || || | ||||| |||||||| ||||| Sbjct 1391 CTTCCAATGTGATAGTTTTGCCTGTCAGTGTTTTTACAAAAATTTGCAT 1439 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||||||||| || || | ||| || ||||| || ||||| ||||| Sbjct 1441 CCACCCCTTAGACGCAACACTAAGTGCAAAGTAGATTCTTTTTGTATATTATAGTCTGAC 1500 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | |||||||||||||| || ||||| || | | |||||||| || || Sbjct 1501 AGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGAGGA 1560 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || || || || ||| |||| ||||| | |||||||| ||| |||| Sbjct 1561 ATGCCTTCTTTATC-CTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGAAGCT-TCCA 1618 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||| || || | ||||| |||||||| ||||| Sbjct 1619 CTTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 1667 Score = 95.1 bits (104), Expect = 8e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||| ||||||||||| || | ||| ||||| ||||| ||||||||||| Sbjct 2353 CCACCCCTAAGGCGCAACACCAAGTGCAAAGTTGATTCCTTCTGAATATTATAATCTGAC 2412 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || ||||| || ||||| || | | ||||||||| || || Sbjct 2413 AGTGTACGACCATCTTCTAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGGA 2472 Query 34600 ACTCCCTCCTTGTCT 34614 | || || |||||| Sbjct 2473 ATACCTTCTTTGTCT 2487 >seq91968 Length=4039 Score = 100 bits (110), Expect = 2e-16 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 46826 GGATGGCCCGTC--ACTTTTATTACACCCGAAGTGATGGCACGTAACGGATTTTATTATC 46883 ||||||||||| | ||||||||| ||||| | ||| | ||||| || ||||| | Sbjct 975 GGATGGCCCGTTGTATTTTTATTAC--CCGAATCTCTCGCAAGGAACGGCTTCTATTACC 918 Query 46884 TTGGAAGAGGTGATGAAGTTCGATGCGCCTTTTGCAAGGTTGAGATCATGCGTTGGGAAG 46943 | || | ||||||||||| || ||||| ||||| || || || || ||| |||| | Sbjct 917 TGGGCCGCGGTGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATTATGAAATGGGTCG 858 Query 46944 AGGGTGATGATCCTGCCGAAGACCATAAACGTTGGGCTCCTCAGTGTCCGTTC 46996 ||| || ||||| ||| | ||||| |||| ||||| || ||||| || ||| Sbjct 857 CGGGCGACGATCCCGCCAAGGACCACCAACGGTGGGCGCCCCAGTGCCCCTTC 805 >seq57945 Length=292 Score = 98.7 bits (108), Expect = 6e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||||||||||||||| || | ||| ||||| ||||| ||||| ||||| Sbjct 181 CCACCCCTAAGACGCAACACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTCTGAC 122 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| ||||| || ||||| || |||| | ||||| || || || Sbjct 121 AGTGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCGGGAGGA 62 Query 34600 ACTCCCTCCTTGTCTGTGATCTTT 34623 | || ||||||||| |||||| Sbjct 61 ATGCCTTCCTTGTCTTGAATCTTT 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313746312636851