Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq72952 95.1 9e-15 seq6456 93.3 3e-14 >seq72952 Length=1956 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| |||||||| ||| ||||| | || || ||| | | Sbjct 1930 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1871 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||||| ||||||||||| |||| || | Sbjct 1870 GACACAATTGAAAAT--GTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATC 1813 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| || || || |||||||| || | || | | || || |||| Sbjct 1812 AACAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGTACACTTTCTGACTACA 1753 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 ||||||||||||| ||||||||||| || | ||||| Sbjct 1752 ACATCCAAAAAGAATCTACTTTGCATTTAGTACTTCGTTT 1713 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| |||||||| ||| ||||| | || || ||| | | Sbjct 1246 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1187 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||||| ||||||||||| |||| || | Sbjct 1186 GACACAATTGAAAAT--GTAAAGGCTAAAATTCAAGACAAAGAAGGCATTCCTCCAGATC 1129 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | || ||||| || || |||||||| || | |||| | | || || |||| Sbjct 1128 AACAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTATCTGACTACA 1069 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || |||||||| ||| | || |||| |||||||||| || || Sbjct 1068 ATATTCAAAAAGAATCCACCCTTCACCTGGTACTGCGTTTGCGAGGAGG 1020 >seq6456 Length=2491 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || ||||| ||| |||||| | || || ||| | Sbjct 1667 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCTTCT 1608 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| || || ||| || || |||||||| |||| | Sbjct 1607 GAC-----ACAATCGAAAATGTTAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTG 1553 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| || | |||||||| ||||||||| | || || | ||||| |||| || | Sbjct 1552 ACCAACAAAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACT 1493 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 | || || |||||||| |||||||| || || |||||| Sbjct 1492 ATAATATACAAAAAGAATCTACTTTGCACTTAGTGTTGCGT 1452 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| || || || ||| ||| ||| | || || ||| | Sbjct 1440 AATGCAAATTTTTGTAAAAACACTGACAGGCAAAACTATCACATTGGAAGTGGAAGCTTC 1381 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || || |||||| ||||| ||||| |||| || Sbjct 1380 TGATACAATAGAAAAT--GTTAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCAGAC 1323 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || | ||||| ||||| ||||| || || || | ||||| |||| ||||| Sbjct 1322 CAACAGAGGCTGATTTTCGCCGGCAAACAGTTAGAAGATGGACGCACTCTGTCTGATTAT 1263 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 || || ||||| || |||||||| || ||||||||| Sbjct 1262 AATATTCAAAAGGAATCTACTTTGCACTTAGTTTTGCGT 1224 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| |||||||| || ||||| ||| ||| ||| | || || ||| | Sbjct 984 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 925 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || || |||||| ||||||||||| |||| || Sbjct 924 TGATACAATAGAAAAT--GTTAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGAC 867 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || |||| ||||||||||| || ||| | || || | ||| | || || |||||| Sbjct 866 CAACAGAGGTTGATTTTTGCCGGTAAGCAACTTGAAGATGGACGAACATTATCTGATTAC 807 Query 27967 AACATCCAAAAAGA 27980 || || || ||||| Sbjct 806 AATATTCAGAAAGA 793 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||||||||| ||||| || || |||||| |||| || || | Sbjct 1212 AATGCAAATTTTTGTGAAAACACTTACCGGCAAGACTATTACTCTTGAAGTTGAGCCTTC 1153 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || ||| |||||| || || ||||| |||| || Sbjct 1152 TGATACAATTGAAAAT--GTTAAAGCAAAAATTCAAGATAAGGAAGGGATTCCCCCAGAC 1095 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || | |||||||| ||||||||| | || || | ||||| |||| || ||| Sbjct 1094 CAACAGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTAC 1035 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 || || ||||| || || ||||| ||||| Sbjct 1034 AATATTCAAAAGGAATCTACCTTGCACTTGGT 1003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354750604347669