Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq72952 136 3e-27 seq6456 118 7e-22 seq148147 89.7 3e-13 >seq72952 Length=1956 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||||||||| || ||||| || || ||||| ||||| || || | Sbjct 1702 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTAGAAGTGGAACCCTCT 1643 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| ||||| ||||| |||||||| || | || || ||||| Sbjct 1642 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 1583 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || ||| ||||||| | |||||| | ||||||||| Sbjct 1582 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAAC 1523 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || |||||||| || || | || || || ||| Sbjct 1522 ATTCAAAAAGAATCTACTCTTCACTTGGTATTA 1490 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| || || |||||||| || ||| | ||||| || || | Sbjct 1246 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1187 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| |||||| ||||||||||| | || ||||||||| Sbjct 1186 GACACAATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 1127 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || ||| ||||||| | ||||| || || ||||| Sbjct 1126 CAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTATCTGACTACAAT 1067 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| ||||| | || | || | | ||||||||||| Sbjct 1066 ATTCAAAAAGAATCCACCCTTCACCTGGTACTGCGTTTGCGAGGAGG 1020 Score = 132 bits (146), Expect = 3e-26 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| || || |||||||| || ||| | ||||| || || | Sbjct 1930 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1871 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| ||||| ||||||||||| | || ||||||||| Sbjct 1870 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 1811 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 || ||| | || || || ||||| ||| ||||||| | || |||||| || |||| Sbjct 1810 CAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGTACACTTT--CTGACTACA 1753 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| |||||||| || || || |||||||| Sbjct 1752 ACATCCAAAAAGAATCTACTTTGCATTTAGT 1722 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || ||||| || || || |||||||| ||||| || || || || | | Sbjct 1475 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCCTAGAGGTAGAACCATC 1416 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | || ||| || |||||||||||| | || ||||| || Sbjct 1415 TGACACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCA 1356 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || |||||||||||||| | || || || ||||| || Sbjct 1355 ACAGAGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATAA 1296 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || || || |||||||||| || Sbjct 1295 TATTCAAAAGGAATCTACTCTACATTTAGTATT 1263 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || ||||| ||||| | ||||| || || | Sbjct 562 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTGGAACCCTCA 503 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | ||||| | || | | |||||||| ||| | || |||||||| Sbjct 502 GACACTATTGAAAATGTTAAAGCCAAGA-TCCAAGACAAAGAGGGTATTCCCCCAGATCA 444 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| |||| || || || || || ||||| || | || ||| | || ||||| Sbjct 443 ACAACGTCTAATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAA 384 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||||||||| || || || || ||| | | ||||||| Sbjct 383 TATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTCTAAGAGGAGG 336 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || || ||||| || || ||||| || || || | | Sbjct 1018 ATGCAAATATTTGTCAAGACACTTACAGGAAAGACCATAACTCTAGAGGTGGAGCCATCT 959 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| || ||| || ||||| ||| | || ||||||||| Sbjct 958 GACACCATTGAAAACGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCTCCAGATCAA 899 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||||||||| || |||||||| | || |||||| || |||||| Sbjct 898 CAACGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGAACTTTATCGGACTACAAC 839 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| ||||| || | ||| | || || | ||||||| || Sbjct 838 ATCCAAAAGGAGTCTACCCTTCATCTTGTACTACGTCTGCGAGGTGG 792 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || ||||| || || || || ||||| || | | Sbjct 790 ATGCAAATATTTGTGAAAACATTAACAGGAAAGACCATTACCCTGGAAGTAGAACCATCT 731 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | |||| | || || ||||| | || ||||| || Sbjct 730 GACACAATCGAGAATGTGAAGGCTAAAA-TACAGGATAAGGAAGGCATTCCCCCAGACCA 672 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| || || ||| ||||||| | |||||||| |||||||| Sbjct 671 ACAGCGTCTCATTTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAA 612 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||||||||| | || || || | | |||||||||| Sbjct 611 TATCCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGG 564 >seq6456 Length=2491 Score = 118 bits (130), Expect = 7e-22 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| || || || ||||| ||||| | ||||| || | | Sbjct 984 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 925 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | |||| | |||| |||||| || ||||||||||| | || ||||| | Sbjct 924 TGATACAATAGAAAATGTTAAGGCAAAAA-TTCAGGACAAAGAAGGCATTCCCCCAGACC 866 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | || || |||||||| || ||||| ||||| | ||| || ||| ||||||| Sbjct 865 AACAGAGGTTGATTTTTGCCGGTAAGCAACTTGAAGATGGACGAACATTATCTGATTACA 806 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || ||||| || || Sbjct 805 ATATTCAGAAAGAATCTAC 787 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || ||||| || || || ||||| ||||| | ||||| || | | Sbjct 1440 AATGCAAATTTTTGTAAAAACACTGACAGGCAAAACTATCACATTGGAAGTGGAAGCTTC 1381 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | |||| | |||| |||||| || ||||| ||||| | || ||||| | Sbjct 1380 TGATACAATAGAAAATGTTAAGGCAAAAA-TTCAGGACAAGGAAGGCATTCCTCCAGACC 1322 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || || ||||||||||| | ||||| | ||||||| | ||||| | Sbjct 1321 AACAGAGGCTGATTTTCGCCGGCAAACAGTTAGAAGATGGACGCACTCTGTCTGATTATA 1262 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 | || ||||| || || || || || |||||||| Sbjct 1261 ATATTCAAAAGGAATCTACTTTGCACTTAGTTTT 1228 Score = 102 bits (112), Expect = 5e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| || || || ||||| || ||| | ||||| || | | Sbjct 1667 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCTTCT 1608 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | |||| |||| | || || |||||||| | || || || || Sbjct 1607 GACACAATCGAAAATGTTAAGGCAAAGA-TTCAGGATAAAGAAGGCATTCCTCCTGACCA 1549 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || |||||||| ||||| | |||||| | || || || Sbjct 1548 ACAAAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTATAA 1489 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||||||||||| || || || || ||||| || Sbjct 1488 TATACAAAAAGAATCTACTTTGCACTTAGTGTT 1456 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || || || || || || || ||||| || ||||| || | | Sbjct 1896 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTGGAAGCTTC 1837 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||||| | |||| |||||| || || ||||| || | || ||||||| Sbjct 1836 TGATACAATTGAAAATGTTAAGGCAAAAA-TTCAGGATAAAGAGGGCATTCCCCCAGATC 1778 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || ||||| || || || || ||||| | ||| || | || |||| Sbjct 1777 AGCAAAGACTTATTTTTGCTGGAAAGCAGCTCGAAGATGGACGTACACTGTCAGACTACA 1718 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 | || || || || || || |||||||||||| Sbjct 1717 ATATTCAGAAGGAATCTACCTTACATTTAGTT 1686 >seq148147 Length=616 Score = 89.7 bits (98), Expect = 3e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| ||||| |||||||| ||||| || ||| | |||||||| | Sbjct 505 AAAATGCAGATTTTCGTAAAAACACTCACGGGTAAAACCATTACTTTGGAAGTTGAACCT 564 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGG 23714 | |||||| |||||| ||||| |||||| ||||| ||||| Sbjct 565 TCCGACACTATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGG 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336953580584276