Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq72952 145 2e-29 seq6456 145 2e-29 seq57945 109 1e-18 >seq72952 Length=1956 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| ||||||||||| |||||||| ||||| ||| || ||| Sbjct 1471 CAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCCTAGAGGTAGAACCATCTGAC 1412 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||| || ||||||||||| || || || ||||| || Sbjct 1411 ACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCAACAG 1352 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||| || || |||||||| || |||||||| | || || | |||||||| | Sbjct 1351 AGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATAATATT 1292 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||| || || ||| | || ||| Sbjct 1291 CAAAAGGAATCTACTCTACATTTAGTATTG 1262 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || |||||||| || || | || || ||| ||| ||| Sbjct 1927 CAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCTGAC 1868 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || || || ||||||||||| || ||||| || || ||| Sbjct 1867 ACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAACAA 1808 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || || || | |||||||| | || ||| | || || ||| || Sbjct 1807 CGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGTACACTTTCTGACTACAACATC 1748 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||||||||| || ||||| Sbjct 1747 CAAAAAGAATCTACTTTGCAT 1727 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || || ||||| || || || || || |||||| ||| || Sbjct 1699 CAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTAGAAGTGGAACCCTCTGAT 1640 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || |||||||| || ||||| || || ||||| Sbjct 1639 ACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAGCAG 1580 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || || | |||||||| | |||||| | ||||| ||| | Sbjct 1579 CGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAACATT 1520 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || || || |||| Sbjct 1519 CAAAAAGAATCTACTCTTCA-CTTG 1496 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || |||||||| || || | || || ||| ||| ||| Sbjct 1243 CAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCTGAC 1184 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| ||||||||||| || ||||| || || ||| Sbjct 1183 ACAATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAACAA 1124 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || | |||||||| | || || | || || || | Sbjct 1123 CGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTATCTGACTACAATATT 1064 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || || || || Sbjct 1063 CAAAAAGAATCCACCCTTCACCTGGT 1038 >seq6456 Length=2491 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || ||||| ||||| ||||| | || |||||| || || Sbjct 1436 CAAATTTTTGTAAAAACACTGACAGGCAAAACTATCACATTGGAAGTGGAAGCTTCTGAT 1377 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||| ||||||||||| ||||| || ||||| ||||| || Sbjct 1376 ACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAG 1317 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || |||||||| |||||| | ||||||||| | ||||| | |||||||| | Sbjct 1316 AGGCTGATTTTCGCCGGCAAACAGTTAGAAGATGGACGCACTCTGTCTGATTATAATATT 1257 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||| ||||| || |||| | |||||| | || || Sbjct 1256 CAAAAGGAATCTACTTTGCACTTAGTTTTGCGTCTAAG 1219 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || ||||| || || | || |||||| || ||| Sbjct 1664 CAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCTTCTGAC 1605 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||||||| |||||||| || ||||| ||||| ||| Sbjct 1604 ACAATCGAAAATGTTAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAACAA 1545 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||| || || |||||||| || ||||||||| | || || | || ||||| | Sbjct 1544 AGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTATAATATA 1485 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||||||||| || |||| | || ||| | || || Sbjct 1484 CAAAAAGAATCTACTTTGCACTTAGTGTTGCGTCTAAG 1447 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || || ||||| ||||| | || || ||| || || Sbjct 980 CAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTCTGAT 921 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||| ||||||||||||||||| || || || ||||| || Sbjct 920 ACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCAACAG 861 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || ||||| || || || ||||||||| | || | | ||||| || | Sbjct 860 AGGTTGATTTTTGCCGGTAAGCAACTTGAAGATGGACGAACATTATCTGATTACAATATT 801 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || || || |||||| | ||||| ||| Sbjct 800 CAGAAAGAATCTACTCTCCACCTTGTTCTCAGACTGAGA 762 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || || || ||||| || || |||||| || || Sbjct 1892 CAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTGGAAGCTTCTGAT 1833 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||| |||||||| ||||| || || || || || |||||| Sbjct 1832 ACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCAGCAA 1773 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || ||||| ||||||||||||||| | || || | || || || | Sbjct 1772 AGACTTATTTTTGCTGGAAAGCAGCTCGAAGATGGACGTACACTGTCAGACTACAATATT 1713 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||||| || | ||| | ||| || | || ||| Sbjct 1712 CAGAAGGAATCTACCTTACATTTAGTTCTGCGTCTGAGA 1674 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || ||||| || || | || |||||| || || Sbjct 2120 CAAATTTTTGTAAAGACACTGACTGGCAAAACAATTACATTAGAAGTGGAAGCTTCTGAT 2061 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||| ||||| ||||||||||| || ||||| ||||| || Sbjct 2060 ACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGGATTCCTCCCGACCAACAG 2001 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||| || || || |||||||| |||||||| | || || | |||||||| | Sbjct 2000 AGGCTTATTTTTGCAGGGAAACAGCTAGAAGATGGTCGTACGCTGTCAGATTATAATATT 1941 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || |||||||| |||| |||| Sbjct 1940 CAGAAGGAATCAACTTTGCA-CTTG 1917 Score = 91.5 bits (100), Expect = 4e-13 Identities = 93/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 |||| ||||||||||| || ||||| ||||| || | ||||| || || |||||||||| Sbjct 2491 TTCAAGACAAAGAAGGTATTCCTCCCGACCAACAGAGGCTTATTTTTGCAGGAAAACAGC 2432 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | |||||||| | || || | |||||||| | || || |||||||| |||| |||| Sbjct 2431 TAGAAGATGGTCGTACACTGTCAGATTATAATATTCAGAAGGAATCAACTTTGCA-CTTG 2373 >seq57945 Length=292 Score = 109 bits (120), Expect = 1e-18 Identities = 121/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 177969 GTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATC 178028 |||||| || || || ||||||||||| || ||||||||| ||||| ||||| || Sbjct 3 GTGGAAGCTTCTGATACAATCGAGAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATT 62 Query 178029 CCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTT 178088 ||||| || || ||| |||| || ||||||||||| || || ||||||||| | || || Sbjct 63 CCTCCCGATCAACAAAGACTAATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACACTG 122 Query 178089 GCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||||| | || || ||||| || |||| |||| Sbjct 123 TCAGACTATAATATTCAGAAGGAATCGACTTTGCA-CTTG 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199777609950318