Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6456 107 2e-18 seq72952 89.7 5e-13 seq57945 84.2 2e-11 >seq6456 Length=2491 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | |||||| || || | |||| || ||||| ||||| ||||| || || Sbjct 1213 CCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCAGAC 1272 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||| ||||||||||| ||||| | ||||||||| | ||| Sbjct 1273 AGAGTGCGTCCATCTTCTAACTGTTTGCCGGCGAAAATCAGCCTCTGTTGGTCTGGAGGA 1332 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| ||||||| | ||| | | || || | ||||| Sbjct 1333 ATGCCTTCCTTGTCC-TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 1391 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| || ||||| || ||||| ||||| ||||| Sbjct 1392 TTCCAATGTGATAGTTTTGCCTGTCAGTGTTTTTACAAAAATTTGCAT 1439 >seq72952 Length=1956 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| || ||||| || || |||||| || ||||| ||||| || Sbjct 792 CCACCTCGCAGACGTAGTACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAT 851 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || ||| | || || |||||||||||||| || || || || ||||| || | ||| Sbjct 852 AAAGTTCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGTTGTTGATCTGGAGGA 911 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| || | | ||| | || || | ||| | | ||||| | |||||| Sbjct 912 ATACCCTCTTTAT-CTTGAATCTTAGCCTTTACGTTTTCAATGGTGTCAGATGGCTCCAC 970 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||||| || || || || || ||||| || || || ||||| Sbjct 971 CTCTAGAGTTATGGTCTTTCCTGTAAGTGTCTTGACAAATATTTGCAT 1018 >seq57945 Length=292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| ||||||| |||| || ||||||||||| |||||||| || || ||||| Sbjct 172 AGACGCAACACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTCTGACAGTGTGCGT 113 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || || ||||| |||||||| || || | ||||| || | |||| || ||| Sbjct 112 CCATCTTCCAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCCTTCC 53 Query 41765 TTGTCCATGATTTTTTGC 41782 |||| | ||| | ||||| Sbjct 52 TTGT-CTTGAATCTTTGC 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460822621956400