Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq33 590 7e-164 seq416 100 3e-16 seq401 91.5 2e-13 >seq33 Length=1899332 Score = 590 bits (654), Expect = 7e-164 Identities = 1206/1764 (68%), Gaps = 56/1764 (3%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || || ||||| |||| |||||||||||||||||||| || | |||| | || ||| Sbjct 686913 GCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAA 686854 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || ||| ||| | ||| |||| | || || || | ||| ||||| | ||||| || Sbjct 686853 TGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTC 686794 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| || || || || ||||| |||||||||| ||| | || ||| | | |||| Sbjct 686793 TGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCC 686734 Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATAGA 53064 || | ||||||||| || || |||| |||||| |||| | || |||| |||||||| Sbjct 686733 CAGACAGTTTTATATAAGTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAATAGA 686675 Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124 |||| || || || ||| || || || |||| |||||| | || ||||| Sbjct 686674 TCCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAA 686615 Query 53125 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC---TCCGAGT 53181 | ||| | | ||| ||||||| ||||| ||||| || ||||| |||| || || Sbjct 686614 ATCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTCTGA-- 686557 Query 53182 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 53241 ||||| || ||| | ||||| | || |||||||||||||| ||||||||||| || Sbjct 686556 -TAAATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGA 686498 Query 53242 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTA 53299 |||||| ||||| || || | |||| |||||||||||| ||||| | ||||| Sbjct 686497 TGCAGTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACC--ATGTTTGGCAATTTTT 686440 Query 53300 TCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 53359 ||||| || | |||||||||| | || | || ||| Sbjct 686439 TCTTTGAGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGC 686380 Query 53360 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGC 53418 | ||||| | |||||| | || | ||| |||| || || || || | ||||||||| Sbjct 686379 AATATACCTTGACTGGCAGGAC-AGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGC 686321 Query 53419 TAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 53478 || |||||||| || |||| ||| || |||||||| ||||| || || | | ||||| Sbjct 686320 TAACTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAA 686261 Query 53479 ATCTTGTGCTTCCAGGCTATC-AAATGGATA--ATTTAAGAGAATAAACGCGTCTGCTAA 53535 | |||| || || || || | ||| |||| || ||| || || ||||| Sbjct 686260 TTTAATTGCTGCCTCACTTTCGTAAGGTATACGCATTAA---AACAAATGCATCAGCTAA 686204 Query 53536 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 53595 |||||| || ||||| ||||| |||| || ||| |||| ||| ||| || ||||| | Sbjct 686203 TCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCAC 686144 Query 53596 AGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACT-TTGACCACAT 53654 ||||||||||| | ||| ||||||||||| | | |||||| || | || || | Sbjct 686143 TGGATAATAATTTACATCAATAATTTTATTTA-GATTCTGAGTTATAGTCTTAGTAACTT 686085 Query 53655 CCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACATGTTCAATGCAATA 53710 |||| | |||| |||| | | |||||| || | |||||||| || || ||||| Sbjct 686084 CCTTTAATTTGGTGAAATTATATGTTTTGTCC-TCATTCACAAACATATTTAAAGCAATT 686026 Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 53770 ||||| ||||| || || || || |||| | | |||| || || |||||||| Sbjct 686025 GATGCTAGATTGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCAC 685966 Query 53771 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 53830 | || || || || || || || || || | ||| || || ||| | || || | ||| Sbjct 685965 AAGTTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCT 685906 Query 53831 TTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACG 53890 |||||||| ||| |||| || || ||||||| || | ||| ||||| |||||||| | Sbjct 685905 TTATAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGA 685846 Query 53891 ACACGAGC-----CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACA 53945 || |||| ||| || || | ||||| |||| ||| ||||| Sbjct 685845 ACTTGAGCTCTCACTTGTTTCACGAAGCGACCCTCTT-----TTTCATATTTCTCATACA 685791 Query 53946 ATCGTTCAAACTCGTCTCCCCAAACATTGT-CCAATCCAGGACATTCATCCGGACACATC 54004 | |||||| || || |||| |||| | | | | |||||||||||||| || ||||| Sbjct 685790 AAGCTTCAAATTCCTCACCCC-AACAGTCTGCTAGTCCAGGACATTCATGGGGGCACATG 685732 Query 54005 AACGACCACTCTCCGTCAT--CCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 54061 | ||| ||| | || | ||| |||| |||||| || | ||||| ||||| | | Sbjct 685731 ATACTCCAATCT---TGATTGCTTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAA 685675 Query 54062 GCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 || ||| ||||| ||||||| | ||| || || || || |||||||| | ||| || Sbjct 685674 GC-ATAGAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAG 685616 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTT 54180 ||| | | ||||||| |||||| ||||| |||||||||| | | || || | ||| Sbjct 685615 GAATTCAAATATATCAGCATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTT 685556 Query 54181 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 54240 || ||||| || |||| |||| ||| ||||| || || ||||| ||||| || | | Sbjct 685555 ATTACCTCCTTGGTCTACATATCGAGCAGTGTTGTTGTACACTCTTAACATGGGTACTAG 685496 Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTA 54298 |||||| || ||||||| || || | ||||| |||| | || | ||| | | || Sbjct 685495 ACCATTAGAGACACCATTTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGT-GTA 685437 Query 54299 ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 54358 ||| ||||||||||| || || ||||| || | || ||| |||||||||| ||| Sbjct 685436 CATGA-AGACCTATCCCACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCA 685378 Query 54359 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 54418 || || ||||| || ||||||||| |||| | ||||| || ||| | ||| | Sbjct 685377 TAAATTCCCTCAATGCTATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGT 685318 Query 54419 CGACTAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 54477 || |||| | || | | | ||| || ||| || || ||||| ||||||| || || Sbjct 685317 CGTGGAGTTGCTGC-TGAGAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAG 685259 Query 54478 TAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 54537 |||||||| || | ||||| || || || ||| ||||||| | || || Sbjct 685258 AAGATTGTAGGTGTTTATAGCCCCCTCAATGTCTTCGCCATGTATTCCTATAGAAACTCG 685199 Query 54538 CATTAACATGTGCTGAGGTCTTTC 54561 ||| | ||| ||||| || ||||| Sbjct 685198 CATGAGCATATGCTGTGGCCTTTC 685175 >seq416 Length=155529 Score = 100 bits (110), Expect = 3e-16 Identities = 158/226 (70%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||| ||| | || ||| || || | ||| ||||| | || ||||| | Sbjct 138917 CCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCGCGCTTCT 138858 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | |||||| || || ||||| ||||| ||||| || ||||| ||||| ||||||| Sbjct 138857 TCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACTGCAGCAAAGG 138798 Query 24277 CAATAAGTCTTTCTCCATAACCGGC------GCTGTCATGTATCCACTTTTGAGCCCAAT 24330 |||| | | || || | ||| |||| || |||||||| | ||||| | Sbjct 138797 CAATGATACGCTCAGCAAATGTGGCTGACTTGCTGGCA---ATCCACTTCAGGGCCCAGT 138741 Query 24331 CGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 | |||||||| || ||||| |||| || || |||||||| || || Sbjct 138740 CAGCCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTGAACAG 138695 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || |||| ||| ||||| || || ||||| || || ||||||||||| || ||||| | | Sbjct 137855 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 137796 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 ||||| ||| |||| || ||||| || |||||||| Sbjct 137795 CAGATATCAGGATACTGTATTGGGAATATAACAAA 137761 >seq401 Length=172835 Score = 91.5 bits (100), Expect = 2e-13 Identities = 243/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 147331 ATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATTTA 147388 |||||||| |||| || ||||| || ||| | || | || || | | |||| | | Sbjct 20940 ATGACTCCGGTATTA--CCTATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGGCAATGA 20883 Query 147389 AAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGTTC 147448 | |||| ||| ||||||||| | || | ||||| || || || |||||||| || | Sbjct 20882 AGAAATGTCCTAACGGAATGTTTTCAGAGATAAAATATGACGGTGAAAGAGTACAGGTGC 20823 Query 147449 ATAAAAATAATAACGAGTTTGCCTTTTTTAGTAGAAACATGAAACCAGTACTCTCTTATA 147508 ||||||| || |||||| | ||| ||| | ||||| || | | ||| Sbjct 20822 ATAAAAAAGGGAATGAGTTTAAATATTTCTCGAGAGCATTAAAACCTGTTATGGCACATA 20763 Query 147509 AAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTAT 147568 |||| | || | ||||| || ||||| ||||||| ||| | || | | | Sbjct 20762 AAGTCAGTCATTTTAAAGATTATTTACCGCAAGCATTCCCAAAGGGGACCGATTTGATTC 20703 Query 147569 TGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACAGC---TCCCGTTTGGAAGTT 147625 | ||| ||||| || | | ||||| | ||| | | ||| | || ||||| | Sbjct 20702 TTGATGCTGAAGTTTTGATGGTAGATGTGAATACAGGAAAGCCTTTGCCATTTGGTACAC 20643 Query 147626 TAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTTGTGTTTGACT 147685 ||||||| || ||| || |||| ||| || | | ||||| ||||||||||||||| Sbjct 20642 TAGGTATCCATAAACAGTCTGAATTCAAAGACGCACAAGTGTGTCTGTTTGTGTTTGACT 20583 Query 147686 GTTTGTACT 147694 |||| |||| Sbjct 20582 GTTTATACT 20574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714200744560