Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq434 212 5e-50 seq12 107 2e-18 seq33 93.3 3e-14 >seq434 Length=190249 Score = 212 bits (234), Expect = 5e-50 Identities = 581/884 (66%), Gaps = 11/884 (1%) Strand=Plus/Plus Query 97380 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 97439 || || ||||| || ||||||||||| || || || || | || || || ||| ||| Sbjct 113945 ACTCCAGTCCAACCACGGCCGTACATAGCAACACCAACGACGATCTTCTTAGGACTGACT 114004 Query 97440 CCTTGTTCCAGTAACGCATCGACAGCGTAATGTGTAGTGTACAGCTCTTCCGAGTTCCAA 97499 || || ||| | | |||| || | | || ||||| ||| | | |||||| Sbjct 114005 CCCTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCAT 114064 Query 97500 CTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGTGTTTGACCAAGCCCCTTTAAAA 97559 || |||| | | | ||||| ||| | | |||||||||||| || || || Sbjct 114065 GCGGGAGCGTGCAGAGCAGCTTGGTGGCCAAGAGTGTCGTTTGACCAAGCTCCCTTGAAG 114124 Query 97560 TCGTAAGTCATGAGAAATATTTTGTCTAATGACTTTTGCGCTTCGGCGTAGTTTACCACG 97619 || || |||| | || || | || | ||| ||| || | ||||| |||||| Sbjct 114125 TCATAGCTCATCAAGAAGATGTGATCCATGTACTGTTGAGCCGCCTTGTAGTCTACCACC 114184 Query 97620 GCAATCTTGTCGTAGCCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTTTGC 97679 ||||||||| | || | ||| || || || | |||||| | |||| || | Sbjct 114185 TGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTTCGTATTTCTTGCCTGTCTTG 114244 Query 97680 ACTTCGAGGTCGTCTAGCATTTCGCGCAGCTCATCCAACAACAGAATGTATGTTTTGGCG 97739 | || |||| ||||| || | ||| || | || || | | ||| | | || Sbjct 114245 GCAGACAGCTCGTTGAGCATCTCTCTCAGTTCCTTCATCAGCTCGACGTAGATGTGACCG 114304 Query 97740 TCACGCTCCGCATCGCCCAGCGACGGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAATCG 97799 || || | || || |||||||| || || || || || || ||||| ||| Sbjct 114305 TCG---TCAGGGCTACCGAGATCAGGGTTAGCGCCCTTACCACCAGGGAACTCCCAGTCG 114361 Query 97800 ACGTCGACACCATCAAAAAATTTCCACACTTGCAAAAATTCCTTAACCGACTCTACAAAA 97859 | ||| || || || || |||||||| || | || |||||||| || || || || Sbjct 114362 ATGTCCACTCCGTCGAAGAATTTCCAGGTTTCAAGGAAGTCCTTAACAGAGTCGACGAAG 114421 Query 97860 ACGTTTCTTTTTTCAAC---GTC-GTGCATGAAATAGAACGGGTCCGACAGAGTCCAGCC 97915 || ||| | || ||| ||| ||| | ||| |||| || || | || |||||||| Sbjct 114422 -CGCTTCCTCTT--AACCTTGTCAGTGAA-GAAGAAGAATGGATCAGCCAAGGTCCAGCC 114477 Query 97916 TCCTATTGAAGGAAGAATTTTTAGATGTGGGTTTGCTAATTTCGCCGCCATCAATTGTCC 97975 || | ||||| | || || || | || |||| |||| | ||||| || || Sbjct 114478 ACCAACGGAAGGTAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAACATCATCAGCTGGCC 114537 Query 97976 AAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTTTGTACGGC 98035 || || || ||||| ||||| ||||| | | || |||||||| ||||| || | || Sbjct 114538 GAAGTTACCCTTGTAGGGTTCATTCCAGGACGCCAAACCCTTTTGTGGTTTCTGAAGAGC 114597 Query 98036 GGCCCACGGATCGTGGATGGCAACTTTGAAATCTTCGCGTCCCCTGCACGATCGTTGCAG 98095 ||||| || |||||||| | |||||||| ||||| | || ||||| ||||||||||| Sbjct 114598 TGCCCAAGGGTCGTGGATCGATACTTTGAAGTCTTCCCTGCCGCTGCAGGATCGTTGCAG 114657 Query 98096 AGCTTCAAAACTTCCGGGTATTGTTTTGAGGGCGTCGTTTATTCCATCGCCACCGCAGAT 98155 ||||| ||||| || ||| ||| | |||||| || ||||| ||||||||||| Sbjct 114658 AGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCCATCTCCACCGCAGAT 114717 Query 98156 GGGTATGAAACCGTACAACAAGTGCGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAA 98215 || ||||||||||||| | || | | ||| || | ||| || ||| ||||| || Sbjct 114718 TGGGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTACGCGGTCGACGGGGAA 114777 Query 98216 GCTGCGCCCGTACACACCCCACTCGACAAAGTACGCAGCGACAA 98259 | | ||| || ||||| ||||| ||||| || | |||| Sbjct 114778 CTTCCTGGGGTAGACGCCCCATTCGACGAAGTAAGCGCCAACAA 114821 >seq12 Length=2918994 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| ||||| ||||| || || || ||| || ||| | Sbjct 2852465 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACTATCACACTAGAAGTTGAGCCCTCT 2852406 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| |||||| || || |||||| | || ||| || Sbjct 2852405 GACACAATTGAAAATGTCAAAGCTAAAATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 2852346 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | ||||| || ||||| |||||||||||| ||| || | ||||||||| Sbjct 2852345 CAGCGATTGATCTTCGCCGGCAAGCAATTGGAAGATGGGCGAACCTTGTCTGATTACAAT 2852286 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| |||||||| ||||||||| |||| | || |||| || || Sbjct 2852285 ATTCAGAAGGAATCCACTCTTCACTTGGTACTTCGTCTACGTGGTGG 2852239 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| ||||| ||||| || || ||| ||| |||||| | Sbjct 2850427 ATGCAAATCTTCGTCAAAACCTTGACCGGCAAGACTATCACCCTAGAAGTTGAACCCTCC 2850368 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||||| || || |||||| | || |||||| Sbjct 2850367 GACACTATTGAAAATGTTAAAGCCAAAATCCAGGACAAGGAAGGTATTCCACCAGATCAG 2850308 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 || || | ||||| || |||||||| ||||||| || | ||| | ||||||||| Sbjct 2850307 CAGCGATTGATCTTCGCCGGCAAACAGCTGGAAGACGGTCGCACACTTT--CCGATTACA 2850250 Query 25213 ATATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||||||| ||||| ||| Sbjct 2850249 ATATTCAAAAGGAATCCACTCTACAC 2850224 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || || | || || |||||||| |||||||| || || ||||||| Sbjct 2853152 AACATGCAGATCTTTGTGAAGACTTTGACGGGGAAAACCATAACATTAGAGGTGGAACCC 2853093 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | | | || ||||||| ||||| ||||| | || ||| Sbjct 2853092 TCTGATACCATTGAAAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCTCCCGAT 2853033 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 ||||| ||| | ||||| || || ||||||||||||||| ||| | |||| ||| Sbjct 2853032 CAACAGAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGACGCACTCTTTCCGACTAC 2852973 Query 25212 AATATTCAAAAGGAATCTACTCTTCA 25237 ||||| || ||||| ||||||||||| Sbjct 2852972 AATATCCAGAAGGAGTCTACTCTTCA 2852947 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || ||||| ||||| || ||||| || || || | Sbjct 2850199 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATTACATTGGAGGTCGAGCCTTCG 2850140 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || |||| |||||| || ||||| || | || ||| ||| Sbjct 2850139 GACACGATCGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGACCAA 2850080 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | ||||| || ||||| |||||||| ||| ||| || | ||||||||| Sbjct 2850079 CAGAGATTGATCTTCGCCGGCAAGCAATTGGAGGATGGACGAACATTGTCTGATTACAAT 2850020 Query 25215 ATTCAAAAGGAATCTAC 25231 ||||| ||||||||||| Sbjct 2850019 ATTCAGAAGGAATCTAC 2850003 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| | || || || || |||||| |||| || || || Sbjct 2423290 ATGCAGATTTTCGTTAAAACGCTTACTGGTAAGACAATTACCCTCGAAGTCGAGCCTTCA 2423349 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| || ||||||||| | || ||| || Sbjct 2423350 GATACTATCGAGAATGTTAAGGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGACCAG 2423409 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | |||||||| ||||| || |||||||| || | | || ||||| Sbjct 2423410 CAAAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 2423469 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| || |||||| |||| | || | ||||| || Sbjct 2423470 ATTCAAAAGGAATCCACCCTTCACCTGGTCCTGCGTCTGCGAGGTGG 2423516 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||||||| | ||||| || || |||||||| || || ||| || || | Sbjct 2852694 AATGCAAATATTCGTAAAAACTTTAACTGGCAAAACAATAACTTTAGAAGTTGAGCCGTC 2852635 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || |||| ||||| ||||| |||||| | ||| ||| || Sbjct 2852634 TGACACAATTGAAAATGTCAAAGCCAAAATACAGGATAAGGAAGGTATTCCCCCAGACCA 2852575 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || |||| ||||| || |||||||| || || ||| | ||| | | ||||| || Sbjct 2852574 GCAGCGACTGATCTTCGCAGGCAAACAGTTAGAGGATGGCCGCACTCTTTCTGATTATAA 2852515 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| || ||||| || ||||| ||| |||| Sbjct 2852514 TATCCAGAAGGAGTCGACTCTCCACTTGGT 2852485 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| || || || ||||||||||| ||| |||||| | Sbjct 2849971 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 2849912 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | || |||||| ||||| || || | || ||||||| Sbjct 2849911 GACACAATTGAAAACGTGAAAGCCAAAATTCAAGATAAGGAGGGAATTCCACCAGATCAA 2849852 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || || || ||||| || | ||||| ||| | ||||||||||| Sbjct 2849851 CAAAGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGCACTCTTTCCGATTACAAT 2849792 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 |||||||||||||| || ||||| Sbjct 2849791 ATTCAAAAGGAATCAACACTTCA 2849769 >seq33 Length=1899332 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | ||||| ||||||| || ||||| ||| ||| ||| | | Sbjct 110663 AATGCAGATCTTCGTAAAAACCCTGACGGGTAAGACCATCACCCTCGAGGTGGAGGCTTC 110722 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | ||| |||||| || ||||| || | || ||| || Sbjct 110723 AGACACTATTGAGAATGTGAAGGCAAAAATCCAGGACAAAGAGGGCATCCCGCCAGACCA 110782 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | |||||||| || || ||||| ||||||||| | ||| | | || || || Sbjct 110783 GCAACGTCTTATCTTCGCCGGTAAACAGTTGGAAGATGGCCGCACTCTTTCAGACTATAA 110842 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 || ||||||||||| ||||||||| ||||| Sbjct 110843 CATCCAAAAGGAATCCACTCTTCACTTGGTG 110873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410791808433758