Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq12 105 1e-17 seq145 91.5 2e-13 >seq12 Length=2918994 Score = 105 bits (116), Expect = 1e-17 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||||||||| | |||| || ||||| | || ||||| ||| || ||||| ||||| Sbjct 2849743 TTCCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGA-ATATTGTAATCG 2849801 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 |||||||| | | || || | || || ||||| |||||||||||||| ||||| || Sbjct 2849802 GAAAGAGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCTTTGTTGATCTGGT 2849861 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 |||||||| || |||||||| || || || ||| Sbjct 2849862 GGAATTCCCTCCTTATCTTGAATTTTGGCTTTCACGTTTTCAATTGTGTCAGAGGGTTCA 2849921 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||| ||| || |||||||| ||||| ||||| | || |||||||| Sbjct 2849922 ACTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 2849971 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | || | ||| | |||||| || || ||||| || || ||| Sbjct 2852923 CCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAA 2852982 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || ||||||||||| || || |||||||| || ||||| |||||| Sbjct 2852983 AGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGA 2853042 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 2853043 ATGCCTTCCTTATCTTG 2853059 Score = 89.7 bits (98), Expect = 8e-13 Identities = 141/210 (67%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||| || || || ||||||||||| |||||||| | || ||| ||| Sbjct 2852485 ACCAAGTGGAGAGTCGACTCCTTCTGGATATTATAATCAGAAAGAGTGCGGCCATCCTCT 2852544 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 || ||||| || || || |||| || ||||| || || ||||| ||||| ||||| || Sbjct 2852545 AACTGTTTGCCTGCGAAGATCAGTCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGT 2852604 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 || || || || ||||||| || |||||||| Sbjct 2852605 ATTTTGGCTTTGACATTTTCAATTGTGTCAGACGGCTCAACTTCTAAAGTTATTGTTTTG 2852664 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATT 146278 || ||||| ||||| | ||||||||||||| Sbjct 2852665 CCAGTTAAAGTTTTTACGAATATTTGCATT 2852694 >seq145 Length=619214 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 |||||| || ||||| |||||||| ||||||||||| || || | | || || ||||| Sbjct 329394 AGCTGGCGTTATTGATGAAGATTACAGAGGAAATGTTGGTGTTGTTATCTTCAACCATTC 329335 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 | || ||| ||| ||| || | ||| |||||||| | ||||| || ||||||| ||| Sbjct 329334 TGATTCAGACTTTGAAATCAAGAAAGGCGATAGAATTGCCCAATTGATCTGTGAAAGAAT 329275 Query 10619 TTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGG 10678 | || ||| | | | | || | | | |||||||| ||||| | || ||| Sbjct 329274 CTACTACCCTGTACTCAAAGAGGTTACAAATCTCTCAGAAACCAAAAGGGCAGAGGGTGG 329215 Query 10679 TTTTGGATCTACTGG 10693 |||||||| || || Sbjct 329214 CTTTGGATCAACAGG 329200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743517133802240