Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq12 107 1e-18 seq33 93.3 3e-14 >seq12 Length=2918994 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| || |||||| |||||||| ||||||||||| || Sbjct 2424656 CCACCACGCAGACGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 2424597 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 2424596 AGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 2424537 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||||| || | || | || | | ||| || Sbjct 2424536 ATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGTTCTACC 2424477 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| || || | || ||||| || |||||||| Sbjct 2424476 TCCAGAGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 2424430 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||| | || |||| || |||||| |||||||| |||||||||||||| Sbjct 2424200 CCACCTCGCAAACGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCGGAA 2424141 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| || || ||||||||||| ||| Sbjct 2424140 AGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 2424081 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | || | ||| | | || || Sbjct 2424080 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTTTCGATAGTATCAGAAGGCTCAACT 2424021 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| || || | || ||||| || |||||||| Sbjct 2424020 TCTAGGGTGATGGTTTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 2423974 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||| ||| | ||| ||| ||||| ||||| |||||||| Sbjct 2425340 CCACCTCGCAGACGCAGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCGGAA 2425281 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||||||| ||||| || || ||||||||||| ||| Sbjct 2425280 AGAGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 2425221 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||||| || | || | || | | ||| || Sbjct 2425220 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGTTCTACC 2425161 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| || || | || ||||| || |||||||| Sbjct 2425160 TCCAGAGTGATGGTTTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 2425114 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| || ||||| | ||| |||||| || ||||||||||| ||| Sbjct 2423288 CCACCACGGAGACGCAGAACAAGGTGGAGCGTAGATTCTTTTTGGATGTTGTAGTCAGAC 2423229 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || |||||||| || ||||| || || |||||||| || ||| Sbjct 2423228 AGTGTGCGACCGTCTTCTAACTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGGGGA 2423169 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || || ||||| || ||| || |||| || | || | |||| | || || Sbjct 2423168 ATGCCTTCTTTGTCTTGAAT-TTTGGCTTTTACATTTTCAATAGTGTCGGATGGCTCAAC 2423110 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || || | ||||||||||| |||||||| Sbjct 2423109 TTCAAGAGTGATAGTTTTACCCGTCAAGGTTTTCACAAAAATCTGCAT 2423062 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| || | ||| |||||||| ||||||||||| || Sbjct 2423972 CCACCTCGCAGACGCAAGACCAAATGCAGAGTTGACTCTTTCTGAATGTTGTAGTCAGAA 2423913 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| || || ||||||||||| ||| Sbjct 2423912 AGGGTACGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 2423853 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| || || ||||| | | || | ||||| | || || Sbjct 2423852 ATTCCTTCCTTGTCTTGGATTTTAGCCTTTACGTTTTCAATGGTATCGGAAGGCTCCACT 2423793 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || ||||| || ||||| || |||||||| Sbjct 2423792 TCAAGGGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATCTGCAT 2423746 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | ||| ||||||||| |||||||| || || Sbjct 2425112 CCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGAA 2425053 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| || || ||||||||||| ||| Sbjct 2425052 AGAGTACGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 2424993 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | || | ||| | | || || Sbjct 2424992 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGCTCAACT 2424933 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || || | || ||||| || |||||||| Sbjct 2424932 TCTAGGGTGATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 2424886 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | ||| ||| ||||| ||||| ||||| || Sbjct 2425568 CCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCAGAA 2425509 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || || ||||||||||| ||| Sbjct 2425508 AGGGTACGCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 2425449 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||||| || | || | || | | || || Sbjct 2425448 ATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCCACT 2425389 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || ||||| || ||||| || || ||||| Sbjct 2425388 TCAAGAGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 2425342 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | ||| |||||| || |||||||| || || Sbjct 2423744 CCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCAGAA 2423685 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||||||| || || || || ||||||||||| ||| Sbjct 2423684 AGGGTGCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGA 2423625 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||||| || | || | || | | || || Sbjct 2423624 ATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCAACT 2423565 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| || || | || ||||| || |||||||| Sbjct 2423564 TCAAGAGTGATGGTTTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 2423518 >seq33 Length=1899332 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | |||||| ||||| | ||| | || ||| ||||| ||||||||||| || Sbjct 99897 CCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGAG 99956 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||||||| || || ||||| || || || |||||||| | |||| Sbjct 99957 AGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAATATAAGACGTTGCTGGTCTGGCGGG 100016 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| |||||| ||| | || | || | || | | || || Sbjct 100017 -ATGCCCTCTTTGTCCTGAATCTTTGCCTTCACATTCTCAATAGTGTCTGAAGCCTCCAC 100075 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || ||||| || ||||| ||||| Sbjct 100076 CTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCAT 100123 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | |||||| ||||||| ||| | ||| ||| || || ||||| ||||| || Sbjct 110890 CCTCCTCTCAGCCTGAGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGAA 110831 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||||||| || || ||||| || || || |||||||| | |||| Sbjct 110830 AGAGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGG 110771 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| || ||| ||| | || | || | || | | || || Sbjct 110770 -ATGCCCTCTTTGTCCTGGATTTTTGCCTTCACATTCTCAATAGTGTCTGAAGCCTCCAC 110712 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || ||||| || ||||||||||| Sbjct 110711 CTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATCTGCAT 110664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323068074372320