Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq434 196 4e-45 seq278 129 4e-25 seq12 118 8e-22 seq33 87.8 1e-12 >seq434 Length=190249 Score = 196 bits (216), Expect = 4e-45 Identities = 769/1190 (65%), Gaps = 31/1190 (3%) Strand=Plus/Plus Query 90775 TTCATTGTGTTGAGCAGATCACCATTATCGGCGTCAATTTCCCATGCAAACAATCCACCC 90834 ||||| | || || | ||||||||| || || || ||||||||||| || | || || Sbjct 113639 TTCATGGCATTTAGTATATCACCATTGTCTGCATCTATTTCCCATGCGAATAGACCTCCT 113698 Query 90835 AACTTGTT-TTGATCAACGTATCTG--CTTTTAGCCAAAACGGAATCAA-CGCTGTCAAA 90890 | ||| || || ||| | ||| || ||||| ||| ||| || ||| | Sbjct 113699 AGCTTATTATTCCTCA-CATATTTGGCCTTTT---CAATTGTCGATCTGGCGTCATCATA 113754 Query 90891 CGTGATAAGGTCGGCTTTATTTTTGTTAAAAACATATGATGCTTCGGCAACTTTGTCAAA 90950 || || ||||| | | | || |||| || || | ||||| || ||||||||| | Sbjct 113755 TGTAATTAGGTCACCAGTCTCCTTCCTAAATACGTAAGGTGCTTGAGCCACTTTGTCATA 113814 Query 90951 CTTGTACACGTACTCG--TTTAT-ATTTTCTTT---TATTTGGCGATAGTCAACGACTCC 91004 | |||| | ||| | || | | | || || ||| | | ||||| || || || Sbjct 113815 ATGGTACTCCCACTTGCCTTGAGCAATCTCATTGGCTATCTCTCTGTAGTCCACTACACC 113874 Query 91005 ATCTTCCCACGTGCCCGTAACCGGACCGTTAGCGACACCATCAAAATAGTTATCACCTTT 91064 ||| | ||| || ||| | || || || |||| |||||| || ||| | |||| Sbjct 113875 ATCCTGCCAGGTACCCTTGACTGGGCCAGTAGCTACACCAGTGAATGGATTACCGTCTTT 113934 Query 91065 GTAATCAGACACGCCTGTCCAGCCGCGCCCGTACATGGCGACACCAATAATTATTTTACT 91124 |||| | || || ||||| || || |||||||| || ||||||| | || || | Sbjct 113935 GTAACCGTTGACTCCAGTCCAACCACGGCCGTACATAGCAACACCAACGACGATCTTCTT 113994 Query 91125 AGAATCAACACCTTGTTTTGTGAGCA-TTTG-CACGGCATGATGCGTGGTGTACAACTCG 91182 || | || || || || | |||| ||| | | | || ||||| ||| Sbjct 113995 AGGACTGACTCCCTGAGCCAACAGGAATTTGACACCGAAG--TCAGTTGTGTAAGTCTCC 114052 Query 91183 TTCGGGTTCCATTGCGGG-GCGTATAGTGTCGTTTGATAGCCCAAATCGGTATTTGACCA 91241 || ||||||||| ||||| |||| || | | ||| | ||| | | | |||||||| Sbjct 114053 TTGGGGTTCCAT-GCGGGAGCGTGCAGAGCAGCTTGGTGGCCAAGAGTGTCGTTTGACCA 114111 Query 91242 AGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAACTTTTGTGCAGCGTC 91301 |||||| || || || || |||| | | || | | || ||| ||| || || | Sbjct 114112 AGCTCCCTTGAAGTCATAGCTCATCAAGAAGATGTGATCCATGTACTGTTGAGCCGCCTT 114171 Query 91302 ATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCTTGTCAATTCGTACAC 91361 || || || | | |||||||| |||| | | ||| || |||| |||||| Sbjct 114172 GTAGTCTACCACCTGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTTCGTATTT 114231 Query 91362 TTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCACGCAACTCTTTTAGCAAAACAAT 91421 || ||||| | || || || | | ||| || | || || || | || | | Sbjct 114232 CTTGCCTGTCTTGGCAGACAGCTCGTTGAGCATCTCTCTCAGTTCCTTCATCAGCTCGAC 114291 Query 91422 GTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGCGCCTTTACCGCCCGG 91481 ||| | | ||||| | || || | | || |||||||| ||||| || || Sbjct 114292 GTAGATGTGACCGTCG---TCAGGGCTACCGAGATCAGGGTTAGCGCCCTTACCACCAGG 114348 Query 91482 AAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTTGCAAAAATTCTTTAAC 91541 || ||||| || || || || ||||| || |||||||| || | || || ||||| Sbjct 114349 GAACTCCCAGTCGATGTCCACTCCGTCGAAGAATTTCCAGGTTTCAAGGAAGTCCTTAAC 114408 Query 91542 CGAATCAACGAACACGTTTCTTCGT----TTGACATCGTGCATAAAATAGAACGGGTCCG 91597 || || ||||| || ||| || | ||| || ||| | || | |||| || || | Sbjct 114409 AGAGTCGACGAAG-CGCTTCCTCTTAACCTTGTCA--GTGAAGAAGA-AGAATGGATCAG 114464 Query 91598 ACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGGTTGGCCAACTTGGCGG 91657 ||| ||||||||||| | ||| ||||| | || | | || | ||| || Sbjct 114465 CCAAGGTCCAGCCACCAACGGAAGGTAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAACA 114524 Query 91658 CCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGGATACACCTTTTTGTG 91717 ||| | ||| || ||||| |||||||| || || ||||| | | | ||| ||||||| Sbjct 114525 TCATCAGCTGGCCGAAGTTACCCTTGTAGGGTTCATTCCAGGACGCCAAACCCTTTTGTG 114584 Query 91718 GTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAAATCATCGCGTCCTTTGC 91777 |||| || | |||||||| || ||||| || || ||||| || || || | || ||| Sbjct 114585 GTTTCTGAAGAGCTGCCCAAGGGTCGTGGATCGATACTTTGAAGTCTTCCCTGCCGCTGC 114644 Query 91778 ACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAGGGCATCGTTTAATCCAT 91837 | |||||||||| | || ||||| || ||| ||| | ||||| | |||| Sbjct 114645 AGGATCGTTGCAGAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCCAT 114704 Query 91838 CGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGGGACAAATTTGGCAGCGGCACCT 91897 | || ||||| || || || |||||||||| ||||||| | ||| || | || || Sbjct 114705 CTCCACCGCAGATTGGGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTACGC 114764 Query 91898 TGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTCAACAAAGTACGCG 91947 ||||| || || || | ||| ||||||||||| || ||||| ||| Sbjct 114765 GGTCGACGGGGAACTTCCTGGGGTAGACGCCCCATTCGACGAAGTAAGCG 114814 >seq278 Length=307000 Score = 129 bits (142), Expect = 4e-25 Identities = 178/247 (72%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 20099 ACATTTTGCACATAATCACGCCCTTTGACAAGCAGCAAGTATCCACAGTTACTAAACCAA 20158 || || || || || || || || || || ||| ||| ||| | ||| ||||| Sbjct 238805 ACCTTCTGTACGTACTCGCGGCCCTTCACCAGCTGCACGTAGGCGCAGCGGTCGAACCAG 238864 Query 20159 CGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCCATTGCAA 20218 || ||||| |||||||| || | ||||||||||||||| ||||| | ||||||| |||| Sbjct 238865 CGCGCGTGCTGTTCCCAGGGCACGTCATCATTTTCCCAGTCTTTCAAACCGCCATCGCAA 238924 Query 20219 TAAAAACACAAAGTTTTATCACC--GCGCGACGTATAATAAAATCCCGCTTCGGCCAATT 20276 || |||||| || ||||| || | || ||| || ||| || |||||||| | || Sbjct 238925 TAGAAACACTTGGTCTTATCCCCCTGACCGGTGTAGAAGAAA--CCAGCTTCGGCAAGTT 238982 Query 20277 CATCGGGCCTTTGCTTCATGCTGCGCGGCCACCCTTCAAAAGTTTTTAAACGCGCAGCTT 20336 | || || ||||| ||||| |||||||| ||| |||| | ||||||||||||| Sbjct 238983 CCTCTGGTTTTTGCCGCATGCATCGCGGCCAGTCTTTAAAACTGCGCAAACGCGCAGCTT 239042 Query 20337 CTGATGC 20343 | || || Sbjct 239043 CGGAAGC 239049 >seq12 Length=2918994 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || | | | ||| | |||||| || ||||||||||| || |||||||| | Sbjct 2852694 TCCTCCGCGCAAACGCAATACTAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGA 2852753 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | ||||||||| |||||||| ||| |||| | || ||| ||||| || Sbjct 2852754 TAATGTGCGTCCATCTTCCAACTGTTTGCCGGCAAAGATCAATCGTTGCTGATCAGGTGG 2852813 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | || |||||||| |||| | || || || | | | | |||||| ||||| Sbjct 2852814 GATACCCTCCTTATCCTGGATTT-TGGCTTTAACATTTTCGATTGTGTCAGAAGGCTCAA 2852872 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| ||||||| |||||||||||||| ||||||||||| Sbjct 2852873 CCTCTAAAGTGATGGTTTTGCCAGTCAATGTTTTTACGAAAATTTGCAT 2852921 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | |||||||| |||||| || ||||| || ||||| ||||| || | | Sbjct 2852239 CCACCACGTAGACGAAGTACCAAGTGAAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 2852298 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||||||| ||||| || |||| | || || || || || Sbjct 2852299 AAGGTTCGCCCATCTTCCAATTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGAGGA 2852358 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||||| | || ||||| | | ||| |||||| |||||| Sbjct 2852359 ATACCTTCCTTGTCCTGAATTT-TAGCTTTGACATTTTCAATTGTGTCAGAGGGCTCAAC 2852417 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| | ||||| ||||| ||||| || || |||||||| Sbjct 2852418 TTCTAGTGTGATAGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 2852465 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || ||||||||||| ||||||||||| | || ||| || ||| Sbjct 2423273 AGAACAAGGTGGAGCGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTGCGACCGTCT 2423214 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || || || || || || |||| |||| || ||||| ||| | |||||| || || Sbjct 2423213 TCTAACTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCT 2423154 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | ||| |||||| ||||| ||||| ||||| | Sbjct 2423153 TGAATTT-TGGCTTTTACATTTTCAATAGTGTCGGATGGCTCAACTTCAAGAGTGATAGT 2423095 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| || ||||| ||||| |||||||| |||||| Sbjct 2423094 TTTACCCGTCAAGGTTTTCACAAAAATCTGCATT 2423061 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||| | ||| || || ||||| |||||||| ||||| |||| Sbjct 2850201 CCACCGCGCAGACGAAGTACTAAGTGTAGAGTGGATTCCTTTTGAATATTGTAATCGGAA 2850260 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||||||| |||||||| || |||| | || || ||||| || Sbjct 2850261 AGTGTGCGACCGTCTTCCAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGTGGA 2850320 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || |||| | |||| | | | | ||| |||||| ||| || Sbjct 2850321 ATACCTTCCTTGTCCTGGATTT-TGGCTTTAACATTTTCAATAGTGTCGGAGGGTTCAAC 2850379 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| | ||||||||||| ||||| || || |||||||| Sbjct 2850380 TTCTAGGGTGATAGTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 2850427 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||||||||| |||||||| ||||| |||| | || | ||||| | || Sbjct 2849769 TGAAGTGTTGATTCCTTTTGAATATTGTAATCGGAAAGAGTGCGCCCGTCTTCAAGCTGC 2849828 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| || | || | |||||||||||| || | || |||||||| ||||| | Sbjct 2849829 TTGCCAGCGAAAATCAATCTTTGTTGATCTGGTGGAATTCCCTCCTTATCTTGAATTT-T 2849887 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| |||||| ||| || ||| | || ||| |||| || || Sbjct 2849888 GGCTTTCACGTTTTCAATTGTGTCAGAGGGTTCAACTTCTAATGTAATGGTTTTACCAGT 2849947 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 || ||||| |||||||||||||| Sbjct 2849948 TAAAGTTTTCACAAAAATTTGCAT 2849971 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || || || || |||||||||| | || | ||||||||||||| Sbjct 2852947 TGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGTCCATCTTCCAATTGT 2853006 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || |||| | ||| |||||||| || | |||||||||||| ||||| | Sbjct 2853007 TTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGAATGCCTTCCTTATCTTGAATTT-T 2853065 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || || | | ||| || ||| ||| || || | || ||| |||| || || Sbjct 2853066 TGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCACCTCTAATGTTATGGTTTTCCCCGT 2853125 Query 18302 CAATGTTTTTACAAAAATTTGCATTTT 18328 ||| || || ||||| || ||||| || Sbjct 2853126 CAAAGTCTTCACAAAGATCTGCATGTT 2853152 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||||||||| |||||||| || | | || | |||||| Sbjct 2423726 ACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCAGAAAGGGTGCGTCCATCTTCA 2423667 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | || ||||| ||| ||||||| | || || || ||| | || ||||| || Sbjct 2423666 AGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 2423607 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | ||| ||||||| ||||| ||||| |||||| |||| Sbjct 2423606 ATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTTTTT 2423547 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || || ||||| ||||| Sbjct 2423546 CCAGTCAATGTCTTCACGAAAATCTGCAT 2423518 >seq33 Length=1899332 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || ||||| || | ||| ||||| ||||| || || ||||||||||| | Sbjct 99897 CCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGAG 99956 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||||||| ||||| || || | ||||| | ||| || || || Sbjct 99957 AGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAATATAAGACGTTGCTGGTCTGGCGGG 100016 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| || || || ||| | | ||| || | ||| |||||| | ||| Sbjct 100017 ATGCCCTCTTTGTCCTGAATCTTTGCCTTCACATTCTCAATAGTGTCTGAAGCCTCCACC 100076 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||||| | || || |||| |||||||| || ||||||||| Sbjct 100077 TCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCATT 100124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379339390614765