Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq434 221 1e-52 >seq434 Length=190249 Score = 221 bits (244), Expect = 1e-52 Identities = 778/1202 (65%), Gaps = 36/1202 (3%) Strand=Plus/Plus Query 35662 CAAG-CCAATATGCATAGCGTTGAGCAAATCGCCGTTGTCCGCATCGATTTCCCATGCGA 35720 |||| || |||| ||| || || || | ||| || ||||| ||||| ||||||||||||| Sbjct 113628 CAAGACCCATATTCATGGCATTTAGTATATCACCATTGTCTGCATCTATTTCCCATGCGA 113687 Query 35721 ATAATCCGCCGAGTCTACGCTGAAGCACGTATTCGCCTTTGGCCAGTACCGATCTTTCGC 35780 ||| || || || || | ||| |||| | | || | | | |||||| || Sbjct 113688 ATAGACCTCCTAGCTTATTATTCCTCACATATTTGGCCTTTTCAATTGTCGATCTGGCGT 113747 Query 35781 TGTCATACGATATTAAGTCGCCAGAGGCGCGGTCG--AATACGTACGCAGCCTTGGCCAC 35838 ||||| | |||| ||| |||| | | || |||||||| | || | ||||| Sbjct 113748 CATCATATGTAATTAGGTCACCAGT--CTCCTTCCTAAATACGTAAGGTGCTTGAGCCAC 113805 Query 35839 GTCGTCG-AATGCGTATTCGTAAC------GCGAAATGTTTTTAGCAATCTGTCTGTAGT 35891 | ||| |||| ||| || | | | ||| | || || |||| |||||||| Sbjct 113806 TTTGTCATAATG-GTACTCCCACTTGCCTTGAGCAATCTCATTGGCTATCTCTCTGTAGT 113864 Query 35892 CGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACGGCTACGCCACTGAATGGAT 35951 | || || || | | ||| |||||| ||| || || ||||| ||| ||||||||| Sbjct 113865 CCACTACACCATCCTGCCAGGTACCCTTGACTGGGCCAGTAGCTACACCAGTGAATGGAT 113924 Query 35952 TGTCACTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCGTACATTGCTACGCCCAACA 36011 | | ||||| || ||| || |||||||| ||||||||||| || || || | | Sbjct 113925 TACCGTCTTTGTAACCGTTGACTCCAGTCCAACCACGGCCGTACATAGCAACACCAACGA 113984 Query 36012 CGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCCACGGCCACGTTGGCGGTGT 36071 ||| || || ||| | |||| || || | || | || | | || | |||| Sbjct 113985 CGATCTTCTTAGGACTGACTCCCTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGT 114044 Query 36072 ACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTCTGATGACCGAGATCGGTAT 36131 | | || || || ||||| |||| | ||| ||| || | || || || ||| | | Sbjct 114045 AAGTCTCCTTGGGGTTCCATGCGGGAGCGTGCAGAGCAGCTTGGTGGCCAAGAGTGTCGT 114104 Query 36132 TAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAATTTTATCTAAATACTGTTGTG 36191 | ||||||||||| ||||| ||||| ||||||| ||| || | ||| | |||||||| | Sbjct 114105 TTGACCAAGCTCCCTTGAAGTCATAGCTCATCAAGAAGATGTGATCCATGTACTGTTGAG 114164 Query 36192 CTCGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAGCGCTAATCGCTGTGGTGAGTT 36251 | | ||| | ||| | |||||||| |||| ||| || |||| || |||| Sbjct 114165 CCGCCTTGTAGTCTACCACCTGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTT 114224 Query 36252 CTAAAGTACGATTCGTTTGTATTTGAA-----CTTGATCGAGCATGGCGCGCAATTCGCC 36306 | ||| | | ||| || | | || | | |||||| | | || ||| Sbjct 114225 C----GTATTTCTTGCCTGTCTTGGCAGACAGCTCGTT-GAGCATCTCTCTCAGTTCCTT 114279 Query 36307 CAATAAAGCGATATACGTGTTATTGTCGCGTTCCACATCGCCAACG---TTTGGATTGGC 36363 || | ||| || ||| | |||| || || | || | || || || Sbjct 114280 CATCAGCTCGACGTAGATGTGACCGTCGT------CAGGGCTACCGAGATCAGGGTTAGC 114333 Query 36364 GCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGTCGAAAAATTTCCATGTCAA 36423 ||| || || || || || ||||| || || || | |||||||| |||||||| || Sbjct 114334 GCCCTTACCACCAGGGAACTCCCAGTCGATGTCCACTCCGTCGAAGAATTTCCAGGTTTC 114393 Query 36424 CACAAATTCACGCACGGATTCGACAAAAATTTGTCGCGTTCGCGCATC-GTGCATATGAT 36482 | || || || || ||||| || | | | | | || ||| | | || Sbjct 114394 AAGGAAGTCCTTAACAGAGTCGACGAAGCGCTTCCTCTTAACCTTGTCAGTGAAGAAGA- 114452 Query 36483 AGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCCAACACTTTTAGATTGGGATTGG 36542 |||| ||||| | || ||||| || || | || | || | || || | || | | Sbjct 114453 AGAATGGATCAGCCAAGGTCCAGCCACCAACGGAAGGTAAGATCTTCAGGTCAGGTCTTG 114512 Query 36543 CCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTGTAGGGTTCGTTCCATG-CGCTA 36601 || ||| ||| | || || || || || ||||||||||| ||||| | ||| | Sbjct 114513 CCTGTTTCAACATCATCAGCTGGCCGAAGTTACCCTTGTAGGGTTCATTCCAGGACGCCA 114572 Query 36602 ACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGTGTATGGAAACTTTAAAATTG 36661 | ||| |||||||||| || || || ||||| || ||||| || || ||||| || | Sbjct 114573 AACCCT-TTTGTGGTTTCTGAAGAGCTGCCCAAGGGTCGTGGATCGATACTTTGAAGTCT 114631 Query 36662 TCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAAACTCCCCGTGATAGATTTTAAACTG 36721 |||||||| ||| |||| ||||| |||| ||||| || ||| ||| |||||| Sbjct 114632 TCCCTGCCGCTGCAGGATCGTTGCAGAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTG 114691 Query 36722 TCGTTTATACCGTCACCGCCGCAAATCGGTATAAATCCGTATAAAATGTGCGAAAGGTTC 36781 ||||| || || || || ||||| || || || || ||||| | || || | ||| ||| Sbjct 114692 TCGTTGATGCCATCTCCACCGCAGATTGGGATGAAACCGTACAGAAGATGGGTAAGATTC 114751 Query 36782 GGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCGTAAACGCCCCATTCGACAAAATAG 36841 || |||| || ||| ||||| || | ||| |||||||||||||| || || Sbjct 114752 GGGATGGGTACGCGGTCGACGGGGAACTTCCTGGGGTAGACGCCCCATTCGACGAAGTAA 114811 Query 36842 GC 36843 || Sbjct 114812 GC 114813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418298917214240