Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq33 594 6e-165 seq401 100 4e-16 seq416 96.9 4e-15 >seq33 Length=1899332 Score = 594 bits (658), Expect = 6e-165 Identities = 1207/1761 (69%), Gaps = 50/1761 (3%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || || ||||| |||| |||||||||||||||||||| || | |||| | || ||| Sbjct 686913 GCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAA 686854 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || ||| || | ||| |||| | || || || | ||| ||||| | ||||| || Sbjct 686853 TGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTC 686794 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| || || || || ||||| |||||||||| ||| | || ||| | | |||| Sbjct 686793 TGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCC 686734 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGA 62302 || | ||||||||| || || |||| |||||| |||| | || |||| ||||| || Sbjct 686733 CAGACAGTTTTATATAAGTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAATAGA 686675 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 |||| || || || ||| || || || |||| |||||| | || ||||| Sbjct 686674 TCCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAA 686615 Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTC---TCCGAGT 62419 | ||| | | ||| | ||||| ||||||||||| || ||||| |||| || || Sbjct 686614 ATCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTCTGA-- 686557 Query 62420 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62479 ||||| || ||| | ||||| | || |||||||||||||| ||||||||||| || Sbjct 686556 -TAAATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGA 686498 Query 62480 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTA 62537 |||||| ||||| || || | |||| |||||||||||| ||||| | ||||| Sbjct 686497 TGCAGTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACC--ATGTTTGGCAATTTTT 686440 Query 62538 TCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGT 62597 ||||| || |||||||||| | || | || | |||||| Sbjct 686439 TCTTTGAGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGC 686380 Query 62598 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGC 62656 | ||||| | |||||| | || | ||| |||| || ||||| || | ||||||||| Sbjct 686379 AATATACCTTGACTGGCAGGAC-AGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGC 686321 Query 62657 TAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAG 62716 || | |||||| || |||| ||| || |||||||| |||||||| || | | ||||| Sbjct 686320 TAACTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAA 686261 Query 62717 ATCTTGTGCTTCCGGGCTATCAAATGG-ATAAT--TTAAGAGAATAAACGCGTCCGCTAA 62773 | |||| || || || | || ||| |||| || ||| || || ||||| Sbjct 686260 TTTAATTGCTGCCTCACTTTCGTAAGGTATACGCATTAA---AACAAATGCATCAGCTAA 686204 Query 62774 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62833 |||||| || ||||| ||||| |||| || ||| |||| ||| ||| || ||||| | Sbjct 686203 TCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCAC 686144 Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACT-TTGACCACAT 62892 ||||||||||| | ||| ||||||||||| ||| |||||| || | || || | Sbjct 686143 TGGATAATAATTTACATCAATAATTTTATTTAGA-TTCTGAGTTATAGTCTTAGTAACTT 686085 Query 62893 CCTTCAGTTTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAATGCAACA 62948 |||| | |||| |||| | | | | || || | |||||||| || || |||| Sbjct 686084 CCTTTAATTTGGTGAAATTATATGTTTTGTCC-TCATTCACAAACATATTTAAAGCAATT 686026 Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 ||||| ||||| ||||| || || |||| | | |||| || || |||||||| Sbjct 686025 GATGCTAGATTGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCAC 685966 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 | || || || || ||||| || || || | ||| || || ||| | || || | ||| Sbjct 685965 AAGTTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCT 685906 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 |||||||| ||| ||||||| || ||||||| || | ||| ||||| |||||||| | Sbjct 685905 TTATAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGA 685846 Query 63129 ACTCGAGCCTTTATTATAGATT--TGTATCTCCTTTCTCTTTCGTATAGAGTATACAATC 63186 ||| |||| | | | | || | | | | ||| |||| ||| |||||| Sbjct 685845 ACTTGAGCTCTCA--CTTGTTTCACGAAGCGACCCTCTTTTTCATATTTCTCATACAAAG 685788 Query 63187 GTTCGAACTCGTCTCCCCAAACATTGT-CCAATCTAGGACATTCATCCGGACACATCAAC 63245 ||| || || || |||| |||| | | | | || ||||||||||| || ||||| | Sbjct 685787 CTTCAAATTCCTCACCCC-AACAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATA 685729 Query 63246 GACCACTCTCCGTCAT--CCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 ||| ||| | || | ||| |||| |||||| || | ||||| ||||| | ||| Sbjct 685728 CTCCAATCT---TGATTGCTTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGC- 685673 Query 63303 ATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 ||| ||||| ||||| | | ||| || || || || |||||||| | ||| ||||| Sbjct 685672 ATAGAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAA 685613 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | | ||||||| |||||| ||||| ||||||||||| | | || || | ||| || Sbjct 685612 TTCAAATATATCAGCATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATT 685553 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 ||||| || |||| |||| ||| ||||| || || ||||| ||||| || | | ||| Sbjct 685552 ACCTCCTTGGTCTACATATCGAGCAGTGTTGTTGTACACTCTTAACATGGGTACTAGACC 685493 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATT 63539 || || | |||||| ||||| | ||||| ||| | || | ||| | | || | Sbjct 685492 ATTAGAGACACCATTTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGT-GTACAT 685434 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 || |||||||| || || || ||||| || | || ||| |||||||||||||||| Sbjct 685433 GA-AGACCTATCCCACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAA 685375 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 || || || ||||||||||| |||| | ||||| || ||| | ||| | || Sbjct 685374 ATTCCCTCAATGCTATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGT 685315 Query 63660 GTAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 | |||| | || | | | ||| || ||| || || ||||| ||||||| || || || Sbjct 685314 GGAGTTGCTGC-TGAGAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAG 685256 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778 |||||| || | ||||| || || || ||| ||||||| | || ||||| Sbjct 685255 ATTGTAGGTGTTTATAGCCCCCTCAATGTCTTCGCCATGTATTCCTATAGAAACTCGCAT 685196 Query 63779 TAACATGTGCTGAGGTCTTTC 63799 | ||| ||||| || ||||| Sbjct 685195 GAGCATATGCTGTGGCCTTTC 685175 >seq401 Length=172835 Score = 100 bits (110), Expect = 4e-16 Identities = 245/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 155254 ATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTTTA 155311 |||||||| |||| || ||||| || ||| | || | || || | | ||| | | Sbjct 20940 ATGACTCCGGTATTA--CCTATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGGCAATGA 20883 Query 155312 AAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTC 155371 | |||| ||| ||||||||| | || | ||||| || |||||||||||||| || | Sbjct 20882 AGAAATGTCCTAACGGAATGTTTTCAGAGATAAAATATGACGGTGAAAGAGTACAGGTGC 20823 Query 155372 ATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATA 155431 |||||||| || |||||| || || ||| | ||||| || | | |||| Sbjct 20822 ATAAAAAAGGGAATGAGTTTAAATATTTCTCGAGAGCATTAAAACCTGTTATGGCACATA 20763 Query 155432 AAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTAT 155491 |||| | || | ||||| || ||||| ||||||| ||| | || | | | Sbjct 20762 AAGTCAGTCATTTTAAAGATTATTTACCGCAAGCATTCCCAAAGGGGACCGATTTGATTC 20703 Query 155492 TGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTA---CCGCTACCGTTTGGAAGTT 155548 | ||| ||||| || | | ||||| | ||| | | || | || ||||| | Sbjct 20702 TTGATGCTGAAGTTTTGATGGTAGATGTGAATACAGGAAAGCCTTTGCCATTTGGTACAC 20643 Query 155549 TAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACT 155608 ||||||| || ||| || |||| ||| || | | ||||| |||| |||||||||| Sbjct 20642 TAGGTATCCATAAACAGTCTGAATTCAAAGACGCACAAGTGTGTCTGTTTGTGTTTGACT 20583 Query 155609 GTTTATACT 155617 ||||||||| Sbjct 20582 GTTTATACT 20574 >seq416 Length=155529 Score = 96.9 bits (106), Expect = 4e-15 Identities = 157/226 (69%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||| ||| | || || || || | ||| ||||| | || ||||| | Sbjct 138917 CCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCGCGCTTCT 138858 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | |||||| || || || || || || ||||| || ||||| ||||||||||||| Sbjct 138857 TCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACTGCAGCAAAGG 138798 Query 33724 CAATAAGTCTCTCTCCATAACCGGC------GCTGTCATGTATCCACTTTTGAGCCCAAT 33777 |||| | | ||| || | ||| |||| || |||||||| | ||||| | Sbjct 138797 CAATGATACGCTCAGCAAATGTGGCTGACTTGCTGGCA---ATCCACTTCAGGGCCCAGT 138741 Query 33778 CGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 | |||||||| || ||||| |||| ||||| || ||||| || || Sbjct 138740 CAGCCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTGAACAG 138695 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| ||| ||||| || || ||||| || || ||||||||||| || ||||| | | Sbjct 137855 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 137796 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 ||||| ||| |||| || |||||||| |||||||| Sbjct 137795 CAGATATCAGGATACTGTATTGGGAATATAACAAA 137761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629809750898160