Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq33 621 3e-173 seq416 93.3 4e-14 >seq33 Length=1899332 Score = 621 bits (688), Expect = 3e-173 Identities = 1216/1778 (68%), Gaps = 28/1778 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||| | |||| ||||| || | || || | | ||| |||||||| ||| Sbjct 686940 TCAACAGTGAACTGGATAGCATTTGCGGCTGGCTTCGTGCGTAAATAGTACATTCCCGTT 686881 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| |||| | |||| | || ||||| ||| |||| ||| | || | || | | Sbjct 686880 TTTAAGCCCATTTTCCACGCATAGAAATGAATAGATGTCAATTTACCATAATTTGGTTCA 686821 Query 36910 TCTATAT--ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCA 36967 | | || |||||| | ||||| || ||||| ||||| || |||||||| || |||| Sbjct 686820 GCAACATGAATATTG--AAGGATTGGCTCTGATCAATAAATGCCCCTCTGTCAGCAGCCA 686763 Query 36968 TTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 ||| || | |||| ||| | ||||| || |||||||||| | |||||| | Sbjct 686762 TTTGTATTGTTGTTTTTACAGACACTTCCCAGACAGTTTTATATAAGTCCCTTATATCTT 686703 Query 37028 CTGGTAAATCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084 || | || | || ||||||||| ||||||| | || ||| || || | Sbjct 686702 TAGGAATTGCTTCAATATTTTGAATAGATCCATTATTGTGGATGATAAGATTTTTCATAT 686643 Query 37085 CATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 | | || ||| | || | ||| ||| |||| || | || |||| ||||| || Sbjct 686642 CTTCATCCCATAAAT--CAGCTTCAGTTAAATCTCGTAACAAATGATGATTAACAACTTG 686585 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 || || || || || |||| ||| ||| || ||| |||| ||||||||| || || Sbjct 686584 GAATTCACCTGACAAGACTCGTCTCTGATAAATGTTGGAAGTAAATGGTTCAAATGATTC 686525 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 |||||| | |||||||||| || |||||||| |||||||| |||| || ||| ||| Sbjct 686524 ATTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGAATT 686465 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 ||| | |||||| | |||| | | ||| ||| ||||| ||| || ||||| || Sbjct 686464 TCTAAGACCATGTTTGGCAATTTTTTCTTTGAGTGACACCCAATTCCACAAGTCTGTGGG 686405 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 | | || ||||||||||||||| | ||||||| ||| || ||| | | | ||| || Sbjct 686404 GGTTTTATTCCACATATCATATTGCAATATACCTTGACTGGCAGGACAGCCTTCATAAGT 686345 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 |||||| || || | | ||||| || ||||| | ||||||||| ||||||| || Sbjct 686344 CTCATAGACGCCATACTTCTCAGCTAACTCACAACTGGCTTCTAGTGCCCCATAATAAAT 686285 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCG-AATGCATAGCCCA 37501 |||||| || |||||| ||||||| | ||||| | || || ||| || | ||| | || Sbjct 686284 TGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTCACTTTCGTAAGGTATA-CGCA 686226 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 ||| | ||| ||||||| || || || || || || || ||||||| || || ||| Sbjct 686225 TTAAAACAAATGCATCAGCTAATCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCATAT 686166 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 | || | | ||| ||||||||||||||| | ||| || |||||||||||||| | Sbjct 686165 TTGAGTTTTTTGCCTCTGGCACTGGATAATAATTTACATCAATAATTTTATTTAGATTCT 686106 Query 37622 TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAA---TACGTTATTATTAA 37678 | || | || |||| | | || ||| ||| || | | || | ||| | Sbjct 686105 GAGTTATAGTCTTAGTAACTTCCTTTAATTTGGTGAAATTATATGTTTTGTCCTCATTCA 686046 Query 37679 CAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA 37738 |||| || | || | ||| ||| ||||||| || ||||| ||||||||| | Sbjct 686045 CAAACATATTTAAAGCAATTGATGCTAGATTGCACACAGCCACTTCATCTGATGAGGTGT 685986 Query 37739 ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGG 37798 ||| || ||| || || || | || || || |||| || ||||| || |||| ||| Sbjct 685985 ATTCTACAATTTCAGTGCACAAGTTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGC 685926 Query 37799 ATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCT 37858 |||| |||| || ||||||||||| || || || || |||||| ||| | ||| || | Sbjct 685925 TTTTTCTATTGCATGAATCTTTATAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTT 685866 Query 37859 CGATAATAGATTTCCATA-AACTTCTTGCTTTAACGATCGCTTTA--AtttttttCTTTG 37915 ||||||||| |||||| | ||||| ||| | || | | || | | || | Sbjct 685865 CGATAATAGCTTTCCAAAGAACTT-GAGCTCTCAC--TTGTTTCACGAAGCGACCCTCTT 685809 Query 37916 TTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCTGGA 37974 |||| |||| ||| || | ||| || | ||||| ||| || || ||| ||| Sbjct 685808 TTTCATATTTCTCATACAAAGCTTCAAATTCCTCACCCCA-ACAGTCTGCTAGTCCAGGA 685750 Query 37975 CATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAA 38034 ||||| || ||||| | | ||| |||| || ||||||| | || ||| || || Sbjct 685749 CATTCATGGGGGCACATGATACTCCAATCTTGATTGCTTTCTACTCTTTTCATGAACAAG 685690 Query 38035 TCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTC 38094 ||||||| |||||| ||| |||| ||| ||| | |||||| ||||| ||| Sbjct 685689 TCAGGTATCCATAAAGCATAGAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTC 685630 Query 38095 TTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATT 38154 ||| | || || || || ||||||||||| ||||||||||||| || || | | | Sbjct 685629 TTTTTCAAATCAAGGAATTCAAATATATCAGCATGCCATGGTTCTAAGTATATGGCAAAT 685570 Query 38155 GCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTT 38214 || || |||||||||| |||||| || | | ||||| | | ||||| || || | |||| Sbjct 685569 GCGCCGGGTCTTTTATTACCTCCTTGGTCTACATATCGAGCAGTGTTGTTGTACACTCTT 685510 Query 38215 AACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCT 38274 ||||| ||||||| ||||||||| || ||| |||| | ||||||||| ||||| ||| Sbjct 685509 AACATGGGTACTAGACCATTAGAGACACCATTTGTACCAGCTATATAAGTTCCCTTTGCT 685450 Query 38275 CGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATT 38332 | || | | || || | ||||| ||||| || || || || | || |||| Sbjct 685449 CTAATGCAGTGTACAT-GA-AGACCTATCCCACCAGCTGACTTAGAAATGAGGGCACATT 685392 Query 38333 GTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAAC 38392 |||||||||| ||| | || || || || || |||||| | |||| || | ||| || Sbjct 685391 GTTTTAACGTGTCATAAATTCCCTCAATGCTATCATCCCTCATTGCTATAAGAAAGCATG 685332 Query 38393 TAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACC 38452 ||| | ||| || ||||||| | || || | || ||| ||||||| | || Sbjct 685331 AAGATAATTGTGGTCGTGGAGTTGCTGCTGAGAAAAGAGTTGGACTTGCATGTGTAAAAT 685272 Query 38453 ATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATAC 38512 ||||||| |||| | ||| || || | ||| | | || || || |||| || || | Sbjct 685271 ATTTTTCTGACAGAAGATTGTAGGTGTTTATAGCCCCCTCAATGTCTTCGCCATGTATTC 685212 Query 38513 CTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 ||| ||| || | ||| |||||||| ||||| |||||| Sbjct 685211 CTATAGAAACTCGCATGAGCATATGCTGTGGCCTTTCT 685174 >seq416 Length=155529 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950 ||||| | ||||| || || | ||| ||||| || || |||| ||| |||||||| Sbjct 138482 TCTCTAATGTATGTGTCAATGAGCAAAGAGTACATCTCAGAGTGAACATTCTCCATAGCA 138423 Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTTC 12009 || || ||||||||||| |||| || || | ||| || || || | | || | ||| Sbjct 138422 ATCTGGAATCCATAGAAGCATCTGGCTTCAG-TCACTTGCACCTCTTGAGAGAAGCGTTC 138364 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 | |||| |||||||| ||||| |||||| | ||||| || || || | |||||| || Sbjct 138363 CACTAAGTTCTCATTAACAATGCCATCAGACGCAGCAAAGAAAGCCAGCACATGTTTGAT 138304 Query 12070 AAAGT 12074 |||| Sbjct 138303 GAAGT 138299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468518961009680