Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq33 634 8e-177 seq416 91.5 2e-13 seq401 91.5 2e-13 >seq33 Length=1899332 Score = 634 bits (702), Expect = 8e-177 Identities = 1236/1799 (69%), Gaps = 40/1799 (2%) Strand=Plus/Minus Query 78696 CTTTATCTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 78755 ||| | |||| ||||| | ||||| || || | | | || || ||||| |||| Sbjct 686956 CTTAACCTTAGATTTGTCAACAGTGAACTGGATAGCATTTGCGGCTGGCTTCGTGCGTAA 686897 Query 78756 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTT 78815 |||||||||||||||||||| || | |||| | |||||||| ||| || | ||| Sbjct 686896 ATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAATGAATAGATGTCAATTT 686837 Query 78816 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 78875 |||| | || || || | ||| ||||| | ||||| || ||||| || || || || Sbjct 686836 ACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTCTGATCAATAAATGCCCC 686777 Query 78876 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 78934 ||||| |||||||||| ||| | || ||| | | |||||| | ||||||||| || Sbjct 686776 TCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCCCAGACAGTTTTATATAA 686717 Query 78935 CTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAA 78991 || |||| |||||| |||| | || |||| ||||| |||||| || || | Sbjct 686716 GTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAATAGATCCATTATTGTGGATGA 686658 Query 78992 TCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 79051 | ||| || || ||||||| |||||| | || |||||| ||| | | ||| Sbjct 686657 TAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAAATCTCGTAACAAATGAT 686598 Query 79052 GATTAACTACTTGAAATTCTCCAGACAATACTC---TCCGAGTGTAAATATTACTGGTAT 79108 ||||||| ||||| ||||| || ||||| |||| || || ||||| || ||| Sbjct 686597 GATTAACAACTTGGAATTCACCTGACAAGACTCGTCTCTGA---TAAATGTTGGAAGTAA 686541 Query 79109 ATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTG 79168 ||||||| | ||||||||||||||||| ||||||||||| ||||| |||||||| || | Sbjct 686540 ATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAG 686481 Query 79169 CCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCA 79226 | | |||| |||||||||||| ||| | | ||||| ||||| || || |||| Sbjct 686480 CTAATAATAGGGAATTTCTAAGACC--ATGTTTGGCAATTTTTTCTTTGAGTGACACCCA 686423 Query 79227 ATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGC 79286 || ||| | || | ||| |||||| | ||||||||| | ||||| | ||| || Sbjct 686422 ATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGCAATATACCTTGACTGGC 686363 Query 79287 GTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTC 79346 | ||| || || ||||| || | ||| || ||||| |||||||| || || Sbjct 686362 AGGACAGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGCTAACTCACAACTGGCTTC 686303 Query 79347 TAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCT 79406 || ||| || |||||||| ||||| || || | | ||| | | |||| | || Sbjct 686302 TAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTCACT 686243 Query 79407 ATC-AAATGGATA--ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 || || | ||| |||| || ||| || || ||||||||||| || ||||| || Sbjct 686242 TTCGTAAGGTATACGCATTAA---AACAAATGCATCAGCTAATCCTTGGACTCCAATTCC 686186 Query 79464 GATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATC 79523 ||| |||| || ||| |||| || ||| || ||||| | ||||||||||| | ||| Sbjct 686185 GATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCACTGGATAATAATTTACATC 686126 Query 79524 TATAATTTTATTGAGATTCCTGACTATTACT-TTGACCACATCCTTTAGTTTGAGAAAAT 79582 ||||||||||| ||||| |||| | || | || || ||||||| |||| |||| Sbjct 686125 AATAATTTTATTTAGATT-CTGAGTTATAGTCTTAGTAACTTCCTTTAATTTGGTGAAAT 686067 Query 79583 CAAA----TCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACG 79638 | | | |||| || | |||||||| || || || | ||||| ||||| || || Sbjct 686066 TATATGTTTTGTCC-TCATTCACAAACATATTTAAAGCAATTGATGCTAGATTGCACACA 686008 Query 79639 GCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATG 79698 || || |||| | | |||| || ||||||||||| | ||| || || ||||| Sbjct 686007 GCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAGTTGCTGCATTTAATA 685948 Query 79699 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGA 79758 || || || || | ||| || || ||| | || || | ||| |||||||| ||| | ||| Sbjct 685947 GTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTATAAAGCATGTATGGA 685888 Query 79759 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 79818 || || ||||||| || | ||| ||||| |||||||| | ||| |||| | | | Sbjct 685887 GTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGAACTTGAGCTCTCACTTGT 685828 Query 79819 GACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAA 79878 | | | | ||| |||| |||| ||| || ||| || || || |||||| Sbjct 685827 TTCACGAAGCGACCCTCTTTTTCATATTTCTCATACAAAGCTTCAAATTCCTCACCCCAA 685768 Query 79879 ACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTT- 79937 || ||| |||||||||||| | || ||||| | ||| ||| || | ||| Sbjct 685767 CAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATACTCCAATCTTGAT--TGCTTT 685710 Query 79938 -TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTA 79995 ||||| |||||| || | ||||| ||||| | ||| ||| ||||| ||||||| | Sbjct 685709 CTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGC-ATAGAATAGCTCTCTGGCACGG 685651 Query 79996 TGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 80055 || || || || || |||||||| | ||| ||||| | | ||||||| |||||| Sbjct 685650 ACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAATTCAAATATATCAGCATGCCAT 685591 Query 80056 GGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTA 80115 ||||| ||||||||||| | | || |||| ||| || ||||| || |||| |||| | Sbjct 685590 GGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACCTCCTTGGTCTACATATCGA 685531 Query 80116 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCG 80175 || ||||| || || ||||| ||||| || | | |||||| || |||||| || || Sbjct 685530 GCAGTGTTGTTGTACACTCTTAACATGGGTACTAGACCATTAGAGACACCATTTGTACCA 685471 Query 80176 GAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCA 80233 | ||||| |||| | || | ||| | | || ||| |||||||| || || || Sbjct 685470 GCTATATAAGTTCCCTTTGCTCTAATGCAGT-GTACATGA-AGACCTATCCCACCAGCTG 685413 Query 80234 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAA 80293 ||||| || | || ||| |||||||||| ||||| || ||||| ||||||||||| Sbjct 685412 ACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAAATTCCCTCAATGCTATCATCCC 685353 Query 80294 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG- 80352 |||| | ||||| || ||| | ||| | || |||| | || | | | ||| Sbjct 685352 TCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGTGGAGTTGCTGC-TGAGAAAAGA 685294 Query 80353 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGAT 80412 || ||| || || ||||| ||||||| ||||| |||||||| || | ||||| Sbjct 685293 GTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAGATTGTAGGTGTTTATAGCCCCC 685234 Query 80413 TCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || || || ||| ||||||| | || ||||| | ||| ||||| || ||||| Sbjct 685233 TCAATGTCTTCGCCATGTATTCCTATAGAAACTCGCATGAGCATATGCTGTGGCCTTTC 685175 >seq416 Length=155529 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || |||| ||| ||||| || || ||||| || || ||||||||||| || ||||| | | Sbjct 137855 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 137796 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 ||||| ||| |||| || |||||||| |||||||| Sbjct 137795 CAGATATCAGGATACTGTATTGGGAATATAACAAA 137761 >seq401 Length=172835 Score = 91.5 bits (100), Expect = 2e-13 Identities = 243/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 173693 ATGACTCCA--ATTAATCCCATGTTAGCAGAATCATGTGATTCTGTCAATAAGGCGTTTA 173750 |||||||| |||| || ||||| || ||| | || | || || | | ||| | | Sbjct 20940 ATGACTCCGGTATTA--CCTATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGGCAATGA 20883 Query 173751 AAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTC 173810 | |||| ||| ||||||||| | || | ||||| || |||||||||||||| || | Sbjct 20882 AGAAATGTCCTAACGGAATGTTTTCAGAGATAAAATATGACGGTGAAAGAGTACAGGTGC 20823 Query 173811 ATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATA 173870 ||||||| || |||||| | || ||| | ||||| || | | |||| Sbjct 20822 ATAAAAAAGGGAATGAGTTTAAATATTTCTCGAGAGCATTAAAACCTGTTATGGCACATA 20763 Query 173871 AAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCATAT 173930 |||| | || | ||||| || ||||| ||||||| ||| | || | | || Sbjct 20762 AAGTCAGTCATTTTAAAGATTATTTACCGCAAGCATTCCCAAAGGGGACCGATTTGATTC 20703 Query 173931 TGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTA---CCGCTACCGTTTGGAAGTT 173987 | ||| ||||| || | | ||||| | ||| | | || | || ||||| | Sbjct 20702 TTGATGCTGAAGTTTTGATGGTAGATGTGAATACAGGAAAGCCTTTGCCATTTGGTACAC 20643 Query 173988 TAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACT 174047 ||||||| || ||| || |||| ||| || | | ||||| |||| |||||||||| Sbjct 20642 TAGGTATCCATAAACAGTCTGAATTCAAAGACGCACAAGTGTGTCTGTTTGTGTTTGACT 20583 Query 174048 GTTTGTACT 174056 |||| |||| Sbjct 20582 GTTTATACT 20574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718259848575080