Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq12 111 1e-19 >seq12 Length=2918994 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| || | |||| ||||| || | ||||||||| ||| Sbjct 2852239 CCACCACGTAGACGAAGTACCAAGTGAAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 2852298 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || |||||||| |||||||| || ||||||||||| || || | || Sbjct 2852299 AAGGTTCGCCCATCTTCCAATTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGAGGA 2852358 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || ||| || ||||||| | ||| |||||| | ||| || Sbjct 2852359 ATACCTTCCTTGTC-CTGAATTTTAGCTTTGACATTTTCAATTGTGTCAGAGGGCTCAAC 2852417 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || ||||| || || || | |||||| || || |||||||| Sbjct 2852418 TTCTAGTGTGATAGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 2852465 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| | | || || || | |||| |||||||| | |||||||||||| Sbjct 2850201 CCACCGCGCAGACGAAGTACTAAGTGTAGAGTGGATTCCTTTTGAATATTGTAATCGGAA 2850260 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || |||| |||| ||||||||||| || ||||||||||| ||||| | || Sbjct 2850261 AGTGTGCGACCGTCTTCCAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGTGGA 2850320 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| |||| || | ||| |||||| | || || Sbjct 2850321 ATACCTTCCTTGTCCTGGATTTTGGCTTTAACATTTTCAATAGTGTCGGAGGGTTCAACT 2850380 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || ||||| || ||||| | ||||| || || |||||||| Sbjct 2850381 TCTAGGGTGATAGTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 2850427 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||| || || ||||| ||| | || ||||| |||||||||||||| Sbjct 2852731 TCTTTTTGGATATTGTAGTCTGATAATGTGCGTCCATCTTCCAACTGTTTGCCGGCAAAG 2852790 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||||||| || ||||| | || | ||| || || || ||| |||| || | Sbjct 2852791 ATCAATCGTTGCTGATCAGGTGGGATACCCTCCTTATCCTGGATTTTGGCTTTAACATTT 2852850 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | |||||| || ||| || |||| || || ||||| || || | ||||| || Sbjct 2852851 TCGATTGTGTCAGAAGGCTCAACCTCTAAAGTGATGGTTTTGCCAGTCAATGTTTTTACG 2852910 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 2852911 AAAATTTGCAT 2852921 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | |||||||||||| | || || |||| || | || ||||| || ||| Sbjct 2849781 TCCTTTTGAATATTGTAATCGGAAAGAGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAAA 2849840 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| |||||||| | || | || || || || || |||| || | Sbjct 2849841 ATCAATCTTTGTTGATCTGGTGGAATTCCCTCCTTATCTTGAATTTTGGCTTTCACGTTT 2849900 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| |||||| | || || |||| || || ||||| || |||| |||||||||| Sbjct 2849901 TCAATTGTGTCAGAGGGTTCAACTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACA 2849960 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 2849961 AAAATTTGCAT 2849971 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | || || ||||| | |||| |||||| || | ||||| || || Sbjct 2852011 CCACCACGCAGACGCAAAACTAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 2852070 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || |||| || | || |||||||| || ||||||||||| || || | || Sbjct 2852071 AGTGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGA 2852130 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| |||| || | | | |||||| || ||| || Sbjct 2852131 ATTCCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCGATTGTGTCTGAAGGCTCAACC 2852190 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| || || | || || || || |||||||| Sbjct 2852191 TCTAGAGTGATGGTTTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 2852237 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | || || ||||| | |||| ||||||||| | ||||| || || Sbjct 2850429 CCACCACGCAGACGCAAAACTAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCTGAA 2850488 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || ||||| || || || || || ||||||| |||||| || | || Sbjct 2850489 AGAGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATCAATCTCTGTTGGTCAGGTGGG 2850548 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || ||| |||| || | | | ||||| | |||||| Sbjct 2850549 ATACCCTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATCGTGTCAGATGGCTCGACC 2850608 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || |||||||| ||||||||||| Sbjct 2850609 TCAAGGGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 2850655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381364966001826