Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq33 590 8e-164 seq416 107 3e-18 seq401 86.0 8e-12 >seq33 Length=1899332 Score = 590 bits (654), Expect = 8e-164 Identities = 1196/1755 (68%), Gaps = 33/1755 (2%) Strand=Plus/Minus Query 70821 TGCGGCT---TTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTA 70877 ||||||| ||||| |||| ||||||||| || ||||||| || | |||| | || Sbjct 686917 TGCGGCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATA 686858 Query 70878 AAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTG 70937 ||||| ||| || | ||| ||| | || || || | |||||||| | || || Sbjct 686857 GAAATGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTG 686798 Query 70938 ACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAAT 70997 || ||||| || || || || ||||| |||||||||| ||| | || ||| | | Sbjct 686797 GCTCTGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACAC 686738 Query 70998 TTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAA 71053 |||||| | ||||||||| || || |||| |||||| |||| | || |||| |||| Sbjct 686737 TTCCCAGACAGTTTTATATAAGTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAA 686679 Query 71054 TGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGG 71113 | |||||| || || || |||||| || ||||||| |||||| | || | Sbjct 686678 TAGATCCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAG 686619 Query 71114 TTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAG 71173 ||||| ||| | | |||| ||||||| ||||| ||||| || ||||| |||| | Sbjct 686618 TTAAATCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTCT 686559 Query 71174 TGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTG 71233 ||||| || ||| | ||||| | ||| |||||||||||||| ||||||||||| | Sbjct 686558 GATAAATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGG 686499 Query 71234 ATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGG--ATTTT 71291 ||||||| ||||| || || | ||||| |||||||||||||||| | || ||||| Sbjct 686498 ATGCAGTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACCATGT--TTGGCAATTTT 686441 Query 71292 ATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNN 71351 ||||| || || |||||||||| | || | || Sbjct 686440 TTCTTTGAGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTG 686381 Query 71352 NNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGC 71411 || || | ||| || | ||| |||| || || || || | || || || Sbjct 686380 CAATATACCTTGACTGGCAGGACAGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGC 686321 Query 71412 TAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAG 71471 || |||||||| || |||| ||| ||||||||||| ||||| || || | | ||| | Sbjct 686320 TAACTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAA 686261 Query 71472 ATCTTGTGCTTCCGGGCTATCAAATGG-ATAAT--TTAAGAGAATAAACGCGTCTGCTAA 71528 | |||| || || || | || ||| |||| || ||| || || ||||| Sbjct 686260 TTTAATTGCTGCCTCACTTTCGTAAGGTATACGCATTAA---AACAAATGCATCAGCTAA 686204 Query 71529 TCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAAT 71588 |||||| || ||||| ||||| |||| ||| ||| |||| || ||| || ||||| | Sbjct 686203 TCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCAC 686144 Query 71589 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCA-CAT 71647 ||||||||||| | ||| ||||||||||| ||||| |||| | || | | | | | | Sbjct 686143 TGGATAATAATTTACATCAATAATTTTATTTAGATT-CTGAGTTATAGTCTTAGTAACTT 686085 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCT--ATT-ACAAACACGTTCAAGGCAACAG 71704 |||||| |||| |||| | || | || ||| ||||||| || || |||| | Sbjct 686084 CCTTTAATTTGGTGAAATTATATGTTTTGTCCTCATTCACAAACATATTTAAAGCAATTG 686025 Query 71705 ATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAA 71764 |||| ||||| || || || || |||| | || |||| || |||||||||||| | Sbjct 686024 ATGCTAGATTGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACA 685965 Query 71765 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 71824 || || || || || || || || || | ||| || || ||| | || || | ||| | Sbjct 685964 AGTTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTT 685905 Query 71825 TATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 71884 ||||||| || | ||||| || ||||||| || | ||| ||||| |||||||| | | Sbjct 685904 TATAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGAA 685845 Query 71885 CTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT 71944 || |||| | | | ||| | | | ||| |||| |||| ||| || || Sbjct 685844 CTTGAGCTCTCACTTGTTTCACGAAGCGACCCTCTTTTTCATATTTCTCATACAAAGCTT 685785 Query 71945 CGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 | || || || |||||| || | | ||| |||||||||||||| || ||||| | | Sbjct 685784 CAAATTCCTCACCCCAA-CAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATACTC 685726 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 72062 || ||| || | ||||| |||||| || | ||||| ||||| | ||| ||| || Sbjct 685725 CAATCTTGATTGCTTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGC-ATAGAA 685667 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 ||| ||||||| | || || || || || |||||||| | ||| ||||| | | Sbjct 685666 TAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAATTCAAA 685607 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 ||||||| |||||| ||||| ||||||||||| | | || || | ||| || ||||| Sbjct 685606 TATATCAGCATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACCTCC 685547 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 || |||| |||| ||| ||||| || || ||||| ||||| || | | |||||| || Sbjct 685546 TTGGTCTACATATCGAGCAGTGTTGTTGTACACTCTTAACATGGGTACTAGACCATTAGA 685487 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGA 72300 ||||||| || || | ||||| |||| | || | ||| | || || ||| ||| Sbjct 685486 GACACCATTTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGTG-TACATGA-AGA 685429 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 ||||| || || || ||||| || | || ||| |||||||||| ||||| || ||| Sbjct 685428 CCTATCCCACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAAATTCCC 685369 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 || || ||||||||| |||| | ||||| || ||| | ||| | || |||| Sbjct 685368 TCAATGCTATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGTGGAGTT 685309 Query 72421 CCCGCATTAAATAAG-GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 | || | | | ||| || ||| || || ||||| ||||||| ||||| |||||||| Sbjct 685308 GCTGC-TGAGAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAGATTGTA 685250 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 || | ||||| || || || ||||||||||| | || ||||| | ||| Sbjct 685249 GGTGTTTATAGCCCCCTCAATGTCTTCGCCATGTATTCCTATAGAAACTCGCATGAGCAT 685190 Query 72540 ATGCTGAGGTCTTTC 72554 |||||| || ||||| Sbjct 685189 ATGCTGTGGCCTTTC 685175 >seq416 Length=155529 Score = 107 bits (118), Expect = 3e-18 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||| ||| | || ||| || || | ||| ||||| | || ||||| | Sbjct 138917 CCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCGCGCTTCT 138858 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | |||||| || || ||||| ||||| ||||| || ||||| ||||| ||||||| Sbjct 138857 TCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACTGCAGCAAAGG 138798 Query 42207 CAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG-TATCCACTTTTGAGCCCAATCGG 42263 |||| | | ||| || | ||| ||| | | |||||||| | ||||| || | Sbjct 138797 CAATGATACGCTCAGCAAATGTGGCTGACTTGCTGGCAATCCACTTCAGGGCCCAGTCAG 138738 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 ||||||| || ||||| |||| ||||| || ||||| || || Sbjct 138737 CCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTGAACAG 138695 >seq401 Length=172835 Score = 86.0 bits (94), Expect = 8e-12 Identities = 239/364 (66%), Gaps = 7/364 (2%) Strand=Plus/Minus Query 165042 ATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTTTA 165099 |||||||| |||| || ||||| || ||| | || | || || | | ||| | | Sbjct 20940 ATGACTCCGGTATTA--CCTATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGGCAATGA 20883 Query 165100 AAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTC 165159 | |||| ||| ||||||||| | || | ||||| || |||||||||||||| || | Sbjct 20882 AGAAATGTCCTAACGGAATGTTTTCAGAGATAAAATATGACGGTGAAAGAGTACAGGTGC 20823 Query 165160 ATaaaaaaaaTAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATA 165219 |||||||| || |||||| | || ||| | ||||| || | | |||| Sbjct 20822 ATAAAAAAGGGAATGAGTTTAAATATTTCTCGAGAGCATTAAAACCTGTTATGGCACATA 20763 Query 165220 AAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTAT 165279 |||| | || | ||||| || ||||| ||||||| ||| | || | | | Sbjct 20762 AAGTCAGTCATTTTAAAGATTATTTACCGCAAGCATTCCCAAAGGGGACCGATTTGATTC 20703 Query 165280 TGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTA---CCGCTACCGTTTGGAAGTT 165336 | ||| ||||| || | | ||||| | ||| | | || | || ||||| | Sbjct 20702 TTGATGCTGAAGTTTTGATGGTAGATGTGAATACAGGAAAGCCTTTGCCATTTGGTACAC 20643 Query 165337 TAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACT 165396 ||||||| || ||| || |||| ||| || | | ||||| |||| |||||||||| Sbjct 20642 TAGGTATCCATAAACAGTCTGAATTCAAAGACGCACAAGTGTGTCTGTTTGTGTTTGACT 20583 Query 165397 GTTT 165400 |||| Sbjct 20582 GTTT 20579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671130835927720