Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq33 156 6e-33 seq4 116 5e-21 seq82 111 2e-19 seq35 104 3e-17 seq416 89.7 8e-13 >seq33 Length=1899332 Score = 156 bits (172), Expect = 6e-33 Identities = 929/1469 (63%), Gaps = 50/1469 (3%) Strand=Plus/Plus Query 96824 TGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAGGGCG 96882 ||| ||||| || ||| | ||| ||||||| || || | ||||| || || || | Sbjct 685492 TGGTCTAGTACCCATGTTAAGAGTGTACAACAACACTG-CTCGATATGTAGACCAAGGAG 685550 Query 96883 GCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTG 96942 | |||||| | || ||||| | ||| | ||||| ||||| ||||| || || | |||| Sbjct 685551 GTAATAAAAGACCCGGCGCATTTGCCATATACTTAGAACCATGGCATGCTGATATATTTG 685610 Query 96943 ACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTT 97002 | || | || || || ||| |||| ||||| | || ||||| || | || | Sbjct 685611 AATTCCTTGATTTGAAAAAGAACACTGGGAAAGAAGAAGTCCGTGCCAGAGAGCTATTCT 685670 Query 97003 ATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCC 97062 |||| | ||| | || || ||||||||||| | || | | | | ||||| Sbjct 685671 ATGCTTTATGGATACCTGACTTGTTCATGAAAAGAGTAGAAAGCAATCAAGATTGGAGTA 685730 Query 97063 TAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCA 97122 | ||||||||| | | || || || | || || ||||| || || ||||| || Sbjct 685731 TCATGTGCCCCCATGAATGTCCTGGACTAGCAGACTGTTGGGGTGAGGAATTTGAAGCTT 685790 Query 97123 AGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGT 97182 ||| | || || ||||||| || | ||||| || ||| || | || || | Sbjct 685791 TGTATGAGAAATATGAAAAAGAGGGTCGCTTCGTGAAACAAGTGAGAGCTCAAGTTCTTT 685850 Query 97183 GGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATA 97242 |||| || || | || || || || || |||||||| ||||| || || || ||| Sbjct 685851 GGAAAGCTATTATCGAAGCACAAGTTGAAACAGGAACTCCATACATGCTTTATAAAGATT 685910 Query 97243 CCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCA 97302 | ||| | || ||||||||| ||||||| || || || || ||| |||||| Sbjct 685911 CATGCAATAGAAAAAGCAACCAAAAGAACTTGGGTACTATTAAATGCAGCAACTTGTGCA 685970 Query 97303 CGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCA 97362 | ||||||||||| ||| |||| | || || ||| || ||| ||| ||||| | Sbjct 685971 CTGAAATTGTAGAATACACCTCATCAGATGAAGTGGCTGTGTGCAATCTAGCATCAATTG 686030 Query 97363 ATCTGCCCAAGTTTGT---AGAGGGTAAAGTGTTTAATCTCAACCTATTGGCAAAGACGG 97419 | | | |||||| |||| ||| | |||| ||| | ||| || || | Sbjct 686031 CTTTAAATATGTTTGTGAATGAGGACAAAACATATAATTTCACCAAATT--AAAGGAAGT 686088 Query 97420 TGC---GTCTGGTGACTAGGAATCTAAACAAGATTATCGACAATGCACT-CTATCCCATT 97475 | | | || | ||| ||||||||| || ||||| || | | | ||||| | Sbjct 686089 TACTAAGACT-ATAACTCAGAATCTAAATAAAATTATTGA-TGTAAATTATTATCCAGTG 686146 Query 97476 CCCTCGGCTGCCAAGTCAAACTTTAAGCACCGACCCATCGGTATAGGAGTGCAAGGCTAC 97535 || ||| || ||||| | | ||||||||||||||| || ||||| ||||| | Sbjct 686147 CCAGAGGCAAAAAACTCAAATATGAGGCACCGACCCATCGGAATTGGAGTCCAAGGATTA 686206 Query 97536 GCAGACGCTCTGGCCATGATGGGTATAGCCTAC------GAGGACTCGATGCAGTTGAAT 97589 || || || | | | ||| ||||| | ||| |||| | || | || ||| Sbjct 686207 GCTGATGCATTTGTTTTAATGCGTATACCTTACGAAAGTGAGGCAGCAATTAAATTAAAT 686266 Query 97590 CGTGACATTTTCGAAACCATCTACCATGCAGCACTGACGGAGAGTTGCCAACTGGC-CAG 97648 | | || || ||||| || || ||| ||||| | ||||| | | || || Sbjct 686267 CAACAAATATTTGAAACAATTTATTATGGGGCACTAGAAGCCAGTTGTGAGTTAGCTGAG 686326 Query 97649 AGTGCACGGAGTCTACGAATCGTACCACGGTAGCCCGACCAGTCGTGGAGAGTTGCACTT 97708 | | | || ||||| || | || | || | || |||||| || ||||| | Sbjct 686327 A-AGTATGGCGTCTATGAGACTTATGAAGGCTGTCCTGCCAGTCAAGGTATATTGCAAT- 686384 Query 97709 CGACCGATACTCGGTGCACAGC-----CAAAAGTGTG--ACTGGTCATCGTTGCGCAAAG 97761 |||| || | | | || | |||| | ||| || | ||||| Sbjct 686385 ---ATGATATGTGGAATAAAACCCCCACAGACTTGTGGAATTGG---GTGTCACTCAAAG 686438 Query 97762 ---ACATTGCTCGGTACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTA 97818 | ||||| | ||| | ||||| || | | | || || ||||| || || Sbjct 686439 AAAAAATTGCCAAACATGGTCTTAGAAATTCCCTATTATTAGCTCCAATGCCAACTGCAT 686498 Query 97819 CCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACC 97878 ||||| | ||| | || || ||| |||||| |||||||| || || || ||||| || | Sbjct 686499 CCACTGCTCAAATATTGGGAAATAATGAATCATTTGAACCATTTACTTCCAACATTTATC 686558 Query 97879 AGAGACGCACCCAGTCTGGAGAGTTTCAA-TTGACCAACGTGCACTTGGTTCGAGACTTG 97937 ||||||| | ||| || || || ||| ||| | | | || ||| | ||||| || Sbjct 686559 AGAGACGAGTCTTGTCAGGTGAATTCCAAGTTGTTAATCAT-CATTTGTTACGAGATTT- 686616 Query 97938 GAAC---GGCTCAATCTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGG 97994 ||| ||| || | ||| | || || ||| | | ||||| |||| ||||| Sbjct 686617 -AACTGAAGCT-GATTTATGGGATGAAGATATGAAAAATCTTATCATCCACAATAATGGA 686674 Query 97995 TCCATTCAAAACATT--ACCATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCT 98052 || |||||||| ||| | || || || |||| | | | || || ||||||| Sbjct 686675 TCTATTCAAAATATTGAAGCA--ATTCCTAAAGATATAAGGGACTTATATAAAACTGTCT 686732 Query 98053 GGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACC 98112 |||| | | || || || | |||||||| |||||||| | | ||||| | Sbjct 686733 GGGAAGTGTCTGTAAAAACAACAATACAAATGGCTGCTGACAGAGGGGCATTTATTGATC 686792 Query 98113 AGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATAC 98172 |||| ||||| |||||| | | ||||| || || | || || |||| || || | Sbjct 686793 AGAGCCAATCCTTCAATATTCATGTTGCTGAACCAAATTATGGTAAATTGACATCTATTC 686852 Query 98173 ACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGG 98232 | || || || ||||| | |||| | || ||||| ||||||||| | | || ||| | | Sbjct 686853 ATTTCTATGCGTGGAAAATGGGCTTAAAAACGGGAATGTACTATTTACGCACGAAGCCAG 686912 Query 98233 CCACCAATGCCATACCATTTACGGTGGAC 98261 || | ||||| || | || || || ||| Sbjct 686913 CCGCAAATGCTATCCAGTTCACTGTTGAC 686941 >seq4 Length=3891429 Score = 116 bits (128), Expect = 5e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 126746 TACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGT 126805 |||| || || ||||| || || |||||||||||||||||||| || ||||| |||| Sbjct 3013279 TACCAAGCCTAATGCCACTCGGGTGAAGAGCGCTCTTGTCTCCGGGAACAGTGTTCTTGT 3013220 Query 126806 TGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACAC 126865 |||| ||||| ||||| || || | ||| || || || || || || | ||| || ||| Sbjct 3013219 TGCAGGCGATGCTGCATAGCTCTAAGATACGTTCGGCGGGAGCGCCGGTGAGGCCAGCAC 3013160 Query 126866 TGCGCAAATCCACTAGAATCAGATGCACATCGGTACCGCCAGTGGTGACGGTGTAGCCTC 126925 |||||| || || || |||| ||||| || || || ||||| | || |||||| | Sbjct 3013159 TGCGCATGTCTACGAGGATCAAGTGCACCTCCGTGCCACCAGTTGCAACTTCGTAGCCAC 3013100 Query 126926 GTGA 126929 | || Sbjct 3013099 GGGA 3013096 Score = 105 bits (116), Expect = 1e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 127204 GCAATCAAGCCCGCAATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCA 127263 |||| || ||| | ||| ||||| ||||||||||||| ||| | || | | || || Sbjct 3012126 GCAACCAGGCCAGAAATATGTGCCATATCGGCCATCAACAACGCTCCATTTTCGTCAGCG 3012067 Query 127264 ATCTCTCGGAATCGTCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATT 127323 |||| ||||| || | |||||||||| || | ||||| || | || || || || Sbjct 3012066 ATCTGACGGAACCGCTTGTAGTCCAAGCATCGGGAGTAGCAGCTAATACCAGCGATAATC 3012007 Query 127324 AGCCTAGGTTTGAATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTC 127383 | | ||||||||| || | ||||| || || || ||| ||||||| | | |||||| Sbjct 3012006 AAACGAGGTTTGAACAGCCTCGCACTTTCAGCCAGCTTGTCATAGTCTATTAAACCAGTC 3011947 Query 127384 TGAGGATCCACCT 127396 | ||||||||||| Sbjct 3011946 TTAGGATCCACCT 3011934 >seq82 Length=1091045 Score = 111 bits (122), Expect = 2e-19 Identities = 182/261 (70%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 50341 CCGATCCTACCCCATCATGTTTGCAATCAATACGAGTCTAATGATTGCGGCCACATTGTA 50400 |||||||| | | ||||||||||| ||||||||| |||||| | ||||||||||| Sbjct 833461 CCGATCCTTCACAATCATGTTTGCGATCAATACGGTCCTAATGTTCTTAGCCACATTGTA 833402 Query 50401 CACGATCCTATTCCTAAAATGGCAAACTCGACCAGAGCAAAAATCCCTCAAAGAGACTGG 50460 ||| | | ||||| || ||||| || | || || ||||| || || || || | || Sbjct 833401 CACTGTGATCTTCCTCAAGTGGCAGACGAGGCCCGAACAAAAGTCTCTGAAGGAAGCGGG 833342 Query 50461 CCTCAAGAATGCACTCGGAGACTTTTTCGATTTGGAAAACATC---AACACTACCCTGAA 50517 ||||||| | || |||||| |||||| | | || ||| | |||| | | Sbjct 833341 AGTCAAGAACCCTCTGACAGACTTCTTCGATGTCAAGAATATCGTGCAGACTA---TAAC 833285 Query 50518 TATTCTAGTGAAAAAGAGGCCCAACAATCGGCGACTCTTTTTGTGGTTCATTTTGCTGTC 50577 ||| || | | ||||| || |||||| | | || ||| | |||||| |||| | || Sbjct 833284 TATATTATCGCAGAAGAGACCTAACAATAGAAGGCTGTTTCTATGGTTCCTTTTAATATC 833225 Query 50578 GATGGCCTTTTATACGTTTCA 50598 ||||| || ||||| ||||| Sbjct 833224 AATGGCGTTCTATACTTTTCA 833204 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 49796 ACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAG 49855 || ||||||||||| ||||| ||||| |||||||| | |||| || | || || || Sbjct 836684 ACAGTGGAGCCTCCAATGTTCCTATATATGATGGCATATATGATCACAAATGTTATAGAA 836625 Query 49856 CAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGC 49915 || | ||||| ||||| ||||| |||||||| |||||||||||| ||||| | ||| Sbjct 836624 CAAACATTTTATGTGTATCAAGCCTGCACCGTTAACCATGGCTACAGTCCAGAAATATGC 836565 Query 49916 CACAACATTAG 49926 ||||||||||| Sbjct 836564 CACAACATTAG 836554 Score = 89.7 bits (98), Expect = 8e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 50602 AGACGAGCGCTCTGTAATGTACATGTATGCAATCAAAGAGTTTAAATGGGACACGACTGC 50661 |||||| || || || ||||| ||||| | || || | || |||||||||||||| | Sbjct 832467 AGACGAACGTTCCGTGATGTATCTGTATACGATAAAGGTATTCAAATGGGACACGACATC 832408 Query 50662 TTATAGCCACTTTAGAACCTACCTGAGTGCAATGTACGTTACGGCGATGCTCTTTGGTAT 50721 || ||| |||| || || || ||||| | ||||| || | || ||||| |||||||| Sbjct 832407 TTTCAGCAACTTCAGGACATATCTGAGCACTATGTATGTCATAGCTATGCTATTTGGTAT 832348 Query 50722 ACCAATCATGAGCCGAATCTTTAAATGGA 50750 |||| | |||| | |||| |||||| Sbjct 832347 ACCACTAATGACTAAAGTCTTGCAATGGA 832319 >seq35 Length=1749349 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 70196 CCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCA 70255 ||| | || || || || |||| || |||||||||| ||||| | | | ||||| Sbjct 913708 CCAGCTGACAGAAGAATGTTAATATGTGCATGGAATCCATCAGATCTAAGCAAGATGGCT 913767 Query 70256 CTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTTA 70315 ||||| || || || || || |||||||| | || ||||| |||| || | Sbjct 913768 CTACCGCCATGCCATTGCTTAGCTCAGTTCCATGTGTCAAGCGGCAAGCTGTCTTGTCTG 913827 Query 70316 ATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCT 70375 | || || ||||||||||| ||||| || ||||| || || |||||||| ||||| || Sbjct 913828 CTTTACCAAAGGAGTGCCGATATGGGGCTGGGTGTTCCTTTCAACATTGCCAGCTACTCA 913887 Query 70376 ATGTTGACGCACATGATTGCTCACATTACCGG 70407 | | || ||||||||||| ||||| || || Sbjct 913888 TTCCTCACTCACATGATTGCCCACATCACAGG 913919 >seq416 Length=155529 Score = 89.7 bits (98), Expect = 8e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 |||||| |||||||||| ||||| ||||||| ||||| | ||||||||||||||| Sbjct 140135 TACAACACCAAGAATCCATTTGACTTCATGAATCTTATATCTTTGGAGGGTAAGACCAAC 140194 Query 125844 TTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || |||||||| || ||||||||| Sbjct 140195 TTCTTTGAGAAGAAAGTTAGCGAGTAC 140221 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || || || || || ||||| ||||| || || |||||||| | ||||||||| | Sbjct 138797 GCCTTTGCTGCAGTTGAAGGCATATTCTTCTCTGGCAGTTTTGCATCAATCTTTTGGATG 138856 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||||||| | ||||| ||| |||| ||| || ||| | || ||| |||| ||| Sbjct 138857 AAGAAGCGCGGATTGATGCCTGGATTGACATTCAGCAATGAGCTGATTTCTAGAGATGAG 138916 Query 125553 G 125553 | Sbjct 138917 G 138917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049964549720