Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq12 161 7e-35 seq278 84.2 2e-11 >seq12 Length=2918994 Score = 161 bits (178), Expect = 7e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| |||| |||||||||||| || || || ||||| || ||||||||| Sbjct 2849745 CCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGGAA 2849804 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||||| | || ||||||||| | ||||| | |||||| || |||| Sbjct 2849805 AGAGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCTTTGTTGATCTGGTGGA 2849864 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || || || ||||||| || || |||| || || || ||| || Sbjct 2849865 ATTCCCTCCTTATCTTGAATTTTGGCTTTCACGTTTTCAATTGTGTCAGAGGGTTCAACT 2849924 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||||||||||||| || | |||||| |||||||||||||| Sbjct 2849925 TCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 2849971 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | || || || |||||||| || ||||| || ||||||||||| Sbjct 2425112 CCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGAA 2425053 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | | ||||| | || ||||| ||| | || | ||| || ||||| ||| Sbjct 2425052 AGAGTACGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 2424993 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| ||| ||| |||| |||||||| | || || Sbjct 2424992 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGCTCAACT 2424933 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||| || ||||| || |||| || || || ||||| |||||| Sbjct 2424932 TCTAGGGTGATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCATA 2424885 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || ||||| |||||||| || |||||||| || ||||| || | | ||| || | | Sbjct 2852710 AATACTAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTC--TGATAATGTGCGTCCAT 2852767 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| || |||||||| || | ||||| ||||| || || ||| || || || || | Sbjct 2852768 CTTCCAACTGTTTGCCGGCAAAGATCAATCGTTGCTGATCAGGTGGGATACCCTCCTTAT 2852827 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | |||||| || ||| |||| || || || | || || ||||| || |||| Sbjct 2852828 CCTGGATTTTGGCTTTAACATTTTCGATTGTGTCAGAAGGCTCAACCTCTAAAGTGATGG 2852887 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || |||| |||||||| |||||||||||| Sbjct 2852888 TTTTGCCAGTCAATGTTTTTACGAAAATTTGCATA 2852922 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | || || ||||| || || || ||||| || |||||||| || Sbjct 2423972 CCACCTCGCAGACGCAAGACCAAATGCAGAGTTGACTCTTTCTGAATGTTGTAGTCAGAA 2423913 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | | ||||| | || ||||| ||| | || | ||| || ||||| ||| Sbjct 2423912 AGGGTACGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 2423853 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||| |||||| |||| ||||||||| | || || Sbjct 2423852 ATTCCTTCCTTGTCTTGGATTTTAGCCTTTACGTTTTCAATGGTATCGGAAGGCTCCACT 2423793 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || |||||||| || || || || || ||||| |||||| Sbjct 2423792 TCAAGGGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATCTGCATA 2423745 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | || || || |||||||| || ||||| || || |||||||| Sbjct 2424884 CCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCTTTCTGGATATTGTAATCAGAA 2424825 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| | ||||| | || ||||| || | || | ||| || ||||| ||| Sbjct 2424824 AGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGA 2424765 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| ||| || |||| |||||||| | || || Sbjct 2424764 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCAACT 2424705 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||| |||||||| || |||| || ||||| ||||| |||||| Sbjct 2424704 TCTAGGGTGATGGTTTTTCCAGTCAAGGTCTTTACGAAAATCTGCATA 2424657 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||||||||| | ||||| || || || |||||||| || || | | ||||| Sbjct 2852026 AAAACTAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTGCGACCGTCT 2852085 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || ||||| ||| | ||||| || || ||||| ||||||||||||||||| Sbjct 2852086 TCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCTTTGTCT 2852145 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| || ||| |||| || || || | || || |||| || |||||| Sbjct 2852146 TGGATTTTGGCTTTAACATTTTCGATTGTGTCTGAAGGCTCAACCTCTAGAGTGATGGTT 2852205 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||||| || || || || ||||||||| Sbjct 2852206 TTGCCTGTCAAGGTCTTGACGAAGATTTGCATA 2852238 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||||| |||||||| || || | | | | ||||| | || Sbjct 2423492 TGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGC 2423433 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | ||||| | ||| ||||| ||| || ||||||||||| |||||| Sbjct 2423432 TTGCCGGCAAAGATCAACCTTTGCTGGTCTGGTGGGATACCTTCTTTGTCTTGAATTTTA 2423373 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || ||||| | || || || | |||||| || ||||| || Sbjct 2423372 GCCTTAACATTCTCGATAGTATCTGAAGGCTCGACTTCGAGGGTAATTGTCTTACCAGTA 2423313 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || ||||| |||||| Sbjct 2423312 AGCGTTTTAACGAAAATCTGCATA 2423289 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || |||||||| |||||||| || || | | |||||||||| || Sbjct 2423264 TGGAGCGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTGCGACCGTCTTCTAACTGC 2423205 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | |||| || || || || ||||| ||||||||||| ||||||| Sbjct 2423204 TTTCCAGCGAAGATCAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGAATTTTG 2423145 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||||| |||| || || ||| || || || | || || |||||||| ||| Sbjct 2423144 GCTTTTACATTTTCAATAGTGTCGGATGGCTCAACTTCAAGAGTGATAGTTTTACCCGTC 2423085 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||||| |||||||| ||||| Sbjct 2423084 AAGGTTTTCACAAAAATCTGCAT 2423062 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | || || ||||| || || || ||||| || |||||||| || Sbjct 2424428 CCACCTCGCAGACGCAAGACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAA 2424369 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || ||||||||| | || | ||| || ||||| |||| Sbjct 2424368 AGGGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGTGGA 2424309 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| ||| ||| |||| |||||||| | || || Sbjct 2424308 ATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGCTCAACT 2424249 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || ||||| || |||| || || || ||||| |||||| Sbjct 2424248 TCGAGGGTGATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCATA 2424201 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||||||||| | ||||| || ||||| |||||||| || ||| | | | ||| Sbjct 2850444 AAAACTAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCTGAAAGAGTGCGACCATCT 2850503 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || || |||||| | ||||| | |||||||| ||| || || || || || Sbjct 2850504 TCCAACTGCTTACCAGCGAAGATCAATCTCTGTTGGTCAGGTGGGATACCCTCCTTATCC 2850563 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| || ||| |||| || || || || || || | ||| ||||| Sbjct 2850564 TGGATTTTGGCTTTAACATTTTCGATCGTGTCAGATGGCTCGACCTCAAGGGTGATGGTC 2850623 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || ||||| || |||||||||||| Sbjct 2850624 TTACCAGTGAGTGTTTTCACGAAAATTTGCATA 2850656 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | | || || |||||||| || || || || ||||| || ||| Sbjct 2425340 CCACCTCGCAGACGCAGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCGGAA 2425281 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | || ||||| ||| | || | ||| || ||||| ||| Sbjct 2425280 AGAGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 2425221 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| ||||||| | || || || || | |||||| Sbjct 2425220 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGTTCTACC 2425161 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || |||||||| || |||| || || || ||||| |||||| Sbjct 2425160 TCCAGAGTGATGGTTTTTCCAGTCAATGTCTTCACGAAAATCTGCATA 2425113 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | || || || |||||||| || |||||||| ||||||||||| Sbjct 2423744 CCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCAGAA 2423685 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || ||||| || | || | ||| || ||||| ||| Sbjct 2423684 AGGGTGCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGA 2423625 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| || ||| ||||||| | || || || || | || || Sbjct 2423624 ATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCAACT 2423565 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || |||||||| || |||| || || || ||||| |||||| Sbjct 2423564 TCAAGAGTGATGGTTTTTCCAGTCAATGTCTTCACGAAAATCTGCATA 2423517 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | || || || |||||||| || || || || ||||| || || Sbjct 2425568 CCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCAGAA 2425509 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | | ||||| | || |||||||| | || | ||| || ||||| ||| Sbjct 2425508 AGGGTACGCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 2425449 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| || ||| ||||||| | || || || || | || || Sbjct 2425448 ATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCCACT 2425389 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || |||||||| || || || || || |||||||||||| Sbjct 2425388 TCAAGAGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCATA 2425341 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || ||||| || |||||||| || ||| | | | ||||| Sbjct 2425778 ACCAAGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCC 2425719 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | || | ||| || ||||| ||||||||||| ||||| Sbjct 2425718 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 2425659 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || |||| |||||||| | || || || | ||| || || || Sbjct 2425658 ATTTTAGCCTTAACGTTTTCGATGGTATCAGAAGGCTCGACTTCAAGGGTGATAGTCTTT 2425599 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || || ||||| |||||| Sbjct 2425598 CCAGTCAAGGTCTTCACGAAAATCTGCATA 2425569 >seq278 Length=307000 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/139 (75%), Gaps = 10/139 (7%) Strand=Plus/Minus Query 80241 AAACCTGAACAATTAGCCGAAGCGGGAtttttttACACCGGTTTTGGTGACAAAACAAAA 80300 ||||| || || | |||||||| || || || ||||||||| || || || || || Sbjct 238992 AAACCAGAGGAACTTGCCGAAGCTGGTTTCTTCTACACCGGTCAGGGGGATAAGACCAAG 238933 Query 80301 TGTTTCTATTGCGCCGGTGGTGTTTGGAA--CTGGGAATTAAATGATGAC---CCATGGG 80355 ||||||||||||| || ||| ||| || ||||||| ||||||||| || |||| Sbjct 238932 TGTTTCTATTGCGATGGCGGT--TTGAAAGACTGGGAA---AATGATGACGTGCCCTGGG 238878 Query 80356 AACAGCACGCCATCTGGTT 80374 |||||||||| |||||| Sbjct 238877 AACAGCACGCGCGCTGGTT 238859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362174799183177