Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq434 242 3e-59 seq278 181 9e-41 seq12 98.7 8e-16 seq33 84.2 2e-11 >seq434 Length=190249 Score = 242 bits (268), Expect = 3e-59 Identities = 584/876 (67%), Gaps = 11/876 (1%) Strand=Plus/Plus Query 100412 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACG 100471 || || |||||||| ||||||||||| ||||| || || | || || || || Sbjct 113945 ACTCCAGTCCAACCACGGCCGTACATAGCAACACCAACGACGATCTTCTTAGGACTGACT 114004 Query 100472 CCCTGGTTCGTGAGCAATTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAA 100531 ||||| | || ||||| || || || || |||| ||| || |||||||| Sbjct 114005 CCCTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCAT 114064 Query 100532 CTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAAATCGGTGTTTGACCAGGCGCCTTTAAAA 100591 || |||| |||| | ||||| ||| | | | ||||||||| || || || || Sbjct 114065 GCGGGAGCGTGCAGAGCAGCTTGGTGGCCAAGAGTGTCGTTTGACCAAGCTCCCTTGAAG 114124 Query 100592 TCGTAGCTCATAAGAAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCACA 100651 || |||||||| | || || | ||| | || ||| || | | ||| | |||||| Sbjct 114125 TCATAGCTCATCAAGAAGATGTGATCCATGTACTGTTGAGCCGCCTTGTAGTCTACCACC 114184 Query 100652 GCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTT-- 100709 ||| ||||| | || || ||||| || |||| ||||| | ||||| || | Sbjct 114185 TGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTTCGTATTTCTTGCCTGTCTTG 114244 Query 100710 GCAGTTGTAGCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGG 100769 |||| |||| || |||||| | | || |||||||| | | ||| ||| Sbjct 114245 GCAGAC--AGCTCGTTGAGCATCTCTCTCAGTTCCTTCATCAGCTCGACGTAGATGTGAC 114302 Query 100770 CGTCGCGCTCCCCGTTGCCAAGAGTCGGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGT 100829 ||||| || | | || ||| ||||| ||||| || || || || |||||||||| Sbjct 114303 CGTCG---TCAGGGCTACCGAGATCAGGGTTAGCGCCCTTACCACCAGGGAACTCCCAGT 114359 Query 100830 CAATGTCCACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAA 100889 | |||||||| ||||| || || ||||| | | || ||||| || ||||| || | Sbjct 114360 CGATGTCCACTCCGTCGAAGAATTTCCAGGTTTCAAGGAAGTCCTTAACAGAGTCGACGA 114419 Query 100890 ACACGC-GCCGTTTTTCCGCATC-GTGCATGAAATAGAACGGGTCGGACAACGTCCAGCC 100947 | ||| || || || || ||| | ||| |||| || || | ||| |||||||| Sbjct 114420 A-GCGCTTCCTCTTAACCTTGTCAGTG-AAGAAGAAGAATGGATCAGCCAAGGTCCAGCC 114477 Query 100948 GCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACC 101007 || | ||| || | || || |||| || | ||| | || | ||| ||||| || Sbjct 114478 ACCAACGGAAGGTAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAACATCATCAGCTGGCC 114537 Query 101008 GAAATTGCCCTTGTACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGC 101067 ||| || |||||||| || || ||||| | | || |||||||| ||||| || | || Sbjct 114538 GAAGTTACCCTTGTAGGGTTCATTCCAGGACGCCAAACCCTTTTGTGGTTTCTGAAGAGC 114597 Query 101068 GGCCCAGGGATCGTGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAG 101127 ||||| || ||||| || | |||||||| ||| | || ||||||| || ||||| Sbjct 114598 TGCCCAAGGGTCGTGGATCGATACTTTGAAGTCTTCCCTGCCGCTGCAGGATCGTTGCAG 114657 Query 101128 CGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAAT 101187 |||| |||||||| || ||| | |||||||| ||| || || ||||| || Sbjct 114658 AGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCCATCTCCACCGCAGAT 114717 Query 101188 GGGTATGAACCCGTACAACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGAAA 101247 || ||||| ||||||| ||||| | ||||| || | || || ||| || || || Sbjct 114718 TGGGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTACGCGGTCGACGGGGAA 114777 Query 101248 ATTGCGGCCGTACACGCCCCACTCTACAAAATACGC 101283 || | | ||| |||||||| || || || || || Sbjct 114778 CTTCCTGGGGTAGACGCCCCATTCGACGAAGTAAGC 114813 >seq278 Length=307000 Score = 181 bits (200), Expect = 9e-41 Identities = 189/248 (76%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 24864 TCGGTCACGACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCGCAGCGC 24923 |||| || ||||| ||||| || ||||||||||| || || | ||||| |||||||| Sbjct 238796 TCGGACATCACCTTCTGTACGTACTCGCGGCCCTTCACCAGCTGCACGTAGGCGCAGCGG 238855 Query 24924 CCGAACCAAAGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAAACCG 24983 ||||||| ||||||| |||| ||| ||| ||||||| | ||||||| | ||||||| Sbjct 238856 TCGAACCAGCGCGCGTGCTGTTCCCAGGGCACGTCATCATTTTCCCAGTCTTTCAAACCG 238915 Query 24984 CCGTCGCAGTAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCAGCTTCT 25043 || ||||| || ||||| ||| || || | | |||||||| ||||| |||||||| Sbjct 238916 CCATCGCAATAGAAACACTTGGTCTTATCCCCCTGACCGGTGTAGAAGAAACCAGCTTCG 238975 Query 25044 GCAAGTTTTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTGCGCAAACGC 25103 ||||||| || || |||| || | || ||||| ||| |||| ||||||||||| Sbjct 238976 GCAAGTTCCTCTGGTTTTTGCCGCATGCATCGCGGCCAGTCTTTAAAACTGCGCAAACGC 239035 Query 25104 GCAGCTTC 25111 |||||||| Sbjct 239036 GCAGCTTC 239043 >seq12 Length=2918994 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| |||||||| || | || | || || |||||||||||||||||||| | Sbjct 2849743 TTCCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGG 2849802 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | || |||| || ||||| || || || |||| | ||| || ||||| | Sbjct 2849803 AAAGAGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCTTTGTTGATCTGGTG 2849862 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| || || |||||| ||| || | | | || || || || Sbjct 2849863 GAATTCCCTCCTTATCTTGAATTTTGGCTTTCACGTTTTCAATTGTGTCAGAGGGTTCAA 2849922 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||||||||||| ||||||||||| |||||||||||||| Sbjct 2849923 CTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 2849971 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||||||||| ||||| |||||||||||||| | || |||| | ||||||| || Sbjct 2849997 TGCAACGTAGATTCCTTCTGAATATTGTAATCAGACAATGTTCGTCCATCCTCCAATTGC 2850056 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || || | || | |||||| || || || | ||||||||||| |||||| Sbjct 2850057 TTGCCGGCGAAGATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTGTCTTGAATTTTG 2850116 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | ||| || || |||||| || | ||||| || || || || Sbjct 2850117 GCTTTGACATTTTCGATCGTGTCCGAAGGCTCGACCTCCAATGTAATAGTCTTGCCGGTC 2850176 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||||| || |||||||| Sbjct 2850177 AAAGTCTTGACGAAGATTTGCAT 2850199 >seq33 Length=1899332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || ||||||| || ||| | ||| | ||| | || || ||||| || || ||||| || Sbjct 99894 TTACCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCT 99953 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | | ||| | | || |||| ||||||||| || | ||||| | ||||| || Sbjct 99954 GAGAGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAATATAAGACGTTGCTGGTCTGGC 100013 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | |||||||||||| ||| || || || | | | ||| || || |||| Sbjct 100014 GGGATGCCCTCTTTGTCCTGAATCTTTGCCTTCACATTCTCAATAGTGTCTGAAGCCTCC 100073 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTA 19045 |||| ||| ||||| ||||| || | ||||| || || ||||||||| || Sbjct 100074 ACCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCATTGTA 100127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||||||| | ||| | ||||| ||| || || || ||||| ||||| ||||| | | Sbjct 106123 TTCCTCCTGTCTGCCTGAGCACCAAGTGGAATGTGGATTCCTTCTGAATGTTGTAGTTTG 106182 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | | || |||| ||||||||| || | ||||| | ||||| || | Sbjct 106183 TGAGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAATATAAGACGTTGCTGGTCTGGCG 106242 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||||||||| ||| || || || | | | ||| || || |||| Sbjct 106243 GAATGCCCTCTTTGTCCTGAATCTTTGCCTTCACATTCTCAATAGTCTCTGAAGCCTCCA 106302 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| ||||| ||||| || | ||||| || || |||||||| Sbjct 106303 CCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCAT 106351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414567762551818