Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq12 111 1e-19 >seq12 Length=2918994 Score = 111 bits (122), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||||||||| || |||||||| || || ||||| ||||| | | || || Sbjct 2424644 CGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCA 2424585 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| ||| || | ||| |||||||| | ||| || || || || Sbjct 2424584 TCTTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTG 2424525 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| ||||| | | ||| ||||| |||| || |||||||| Sbjct 2424524 TCCTGGATCTTGGCC---TTTACATTCTCAATAGTGTCAGAAGGTTCTACCTCCAGAGTG 2424468 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || | || || |||||||| ||||| Sbjct 2424467 ATGGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 2424430 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || || |||||||| || ||||| ||||||| || | ||| || || ||||||||| Sbjct 2423258 GTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTGCGACCGTCTTCTAACTGCTTTCCA 2423199 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || || | || ||||| || | ||| ||||||||||| || ||| |||| Sbjct 2423198 GCGAAGATCAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTT 2423139 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || ||| ||| |||||| || | ||| || ||||| || ||||| ||||| | ||| Sbjct 2423138 ACATTTTCAATAGTGTCGGATGGCTCAACTTCAAGAGTGATAGTTTTACCCGTCAAGGTT 2423079 Query 33353 TTTACGAAAATTTGCAT 33369 || || ||||| ||||| Sbjct 2423078 TTCACAAAAATCTGCAT 2423062 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | ||||| ||||| || | || || |||||||| || ||||||||||| Sbjct 2423745 ACCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCAGA 2423686 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || || || || | ||||| || ||| || | ||| |||||||| | ||| Sbjct 2423685 AAGGGTGCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGG 2423626 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || || || || | | | ||| ||||| | | ||| ||||| || | Sbjct 2423625 AATTCCCTCCTTGTCCTGGATCTTGGCC---TTTACATTCTCAATAGTGTCAGAAGGCTC 2423569 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || ||||| || |||||||| || | || || |||||||| ||||| Sbjct 2423568 AACTTCAAGAGTGATGGTTTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 2423518 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || || || || ||||||||||||||||| | | || ||| Sbjct 2852257 ACCAAGTGAAGAGTGGATTCCTTCTGAATATTGTAATCAGACAAGGTTCGCCCATCTTCC 2852316 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| || || || || || |||||||| | || || ||||| || || | Sbjct 2852317 AATTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGA 2852376 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || ||| || ||| ||| ||||| ||| | ||| || || || || || || Sbjct 2852377 ATTTTAGCTTTGACATTTTCAATTGTGTCAGAGGGCTCAACTTCTAGTGTGATAGTCTTG 2852436 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | |||||| ||||| |||||||| Sbjct 2852437 CCAGTCAAAGTTTTGACGAAGATTTGCAT 2852465 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| |||| | || ||||| | ||| || || ||||| ||||||||||| || Sbjct 2849745 CCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGGAA 2849804 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | || | ||| || | ||||| ||| || || || | ||| || || | || Sbjct 2849805 AGAGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCTTTGTTGATCTGGTGGA 2849864 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || || || || ||| ||| || ||| ||| ||||| ||||| ||| Sbjct 2849865 ATTCCCTCCTTATCTTGAATTTTGGCTTTCACGTTTTCAATTGTGTCAGAGGGTTCAACT 2849924 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || | || || ||||| || || | |||||| || |||||||||||| Sbjct 2849925 TCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCATG 2849972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318773726553306