Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq12 104 2e-17 seq33 82.4 5e-11 >seq12 Length=2918994 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | ||| | ||| || || ||| || || ||||| || ||| Sbjct 2852922 ACCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGA 2852981 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| |||||||||||||| || || ||||| | || || || ||| Sbjct 2852982 AAGAGTG-CGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAG 2853040 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| |||||| ||||||| ||| || | ||| ||||| | || |||| Sbjct 2853041 GAATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCA 2853100 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 | || | || || ||||| || || |||||||||||||| || ||||||| Sbjct 2853101 CCTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCATGT 2853151 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971 ||||| || || || ||| || || ||||||||||| | | || || |||| || Sbjct 2852485 ACCAAGTGGAGAGTCGACTCCTTCTGGATATTATAATCAGAAAGAGTGCGGC-CATCCTC 2852543 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || ||||| ||||| || |||| || |||||||| | || | |||||| ||||| Sbjct 2852544 TAACTGTTTGCCTGCGAAGATCAGTCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTG 2852603 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||| |||||| | ||| || || | |||||| || || | || |||||||| Sbjct 2852604 TATTTTGGCTTTGACATTTTCAATTGTGTCAGACGGCTCAACTTCTAAAGTTATTGTTTT 2852663 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||||||| || || ||||||||||| Sbjct 2852664 GCCAGTTAAAGTTTTTACGAATATTTGCAT 2852693 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| |||| || ||||| || || || ||||||||||| |||||| Sbjct 2849745 CCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGGAA 2849804 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || ||| | || || | || || || || || ||||| | ||| || || | || Sbjct 2849805 AGAGTG-CGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCTTTGTTGATCTGGTGG 2849863 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || || |||||| |||||| ||| || | ||| || || | || || || Sbjct 2849864 AATTCCCTCCTTATCTTGAATTTTGGCTTTCACGTTTTCAATTGTGTCAGAGGGTTCAAC 2849923 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 || | ||||| |||||||| |||||||| |||||||| ||||||||| || Sbjct 2849924 TTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCATGCCG 2849975 >seq33 Length=1899332 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||| || | |||||| || || ||| || ||||| || ||||| || Sbjct 110891 ACCTCCTCTCAGCCTGAGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGA 110832 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| ||||| ||||| || || || || | ||||||||||| | | Sbjct 110831 AAGAGTGCGGC-CATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCG 110773 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | || ||||| || |||||| || || | ||| ||| |||| | ||||| Sbjct 110772 GGATGCCCTCTTTGTCCTGGATTTTTGCCTTCACATTCTCAATAGTGTCTGAAGCCTCCA 110713 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | |||| || || || ||||| || | || || || || || ||||| Sbjct 110712 CCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATCTGCAT 110664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354773289119556