Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq434 228 7e-55 seq278 131 1e-25 seq12 89.7 4e-13 >seq434 Length=190249 Score = 228 bits (252), Expect = 7e-55 Identities = 581/876 (66%), Gaps = 11/876 (1%) Strand=Plus/Plus Query 101102 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCT-AC 101160 || || |||||||| ||||||||||| ||||| || || | || || | || || || Sbjct 113945 ACTCCAGTCCAACCACGGCCGTACATAGCAACACCAACGACGATCTT-CTTAGGACTGAC 114003 Query 101161 GCCCTGGTTCGTGAGCGATTTAACAGCGTAATCCGTGTTGTACAGCTCGTTTGGGTTCCA 101220 ||||| | || |||| ||| || | || || |||| ||| || |||||||| Sbjct 114004 TCCCTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCA 114063 Query 101221 ACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGATCGATGTTTGACCACGCGCCTTTGAA 101280 || |||| || | || ||| | ||| ||| | ||||||||| || || ||||| Sbjct 114064 TGCGGGAGCGTGCAGAGCAGCTTGGTGGCCAAGAGTGTCGTTTGACCAAGCTCCCTTGAA 114123 Query 101281 ATCGTAGCTCATGAGAAATATTTTATCGAGGAACTTTTGCGCAAGATCGTATTTTACTAC 101340 || |||||||| | || || | ||| | | ||| ||| || | ||| | ||| || Sbjct 114124 GTCATAGCTCATCAAGAAGATGTGATCCATGTACTGTTGAGCCGCCTTGTAGTCTACCAC 114183 Query 101341 AGCAATTTTGTCGTGACCCGAACTAATTGCACTTGTTAATTCGTATGTTTTGCCCG--TT 101398 ||| ||||| ||| || || || || || | ||||||| | ||||| | || Sbjct 114184 CTGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTTCGTATTTCTTGCCTGTCTT 114243 Query 101399 TGCAGTTGCAACTCGTCCAGCATTGCGCGCAATTCTTTCAGTAAAATGTTGTACGTGTCA 101458 |||| || ||||| ||||| | | || ||| |||| | | ||| ||| | Sbjct 114244 GGCAG--ACAGCTCGTTGAGCATCTCTCTCAGTTCCTTCATCAGCTCGACGTAGATGTGA 114301 Query 101459 GCGTCGCGTTCTTTGTTGCCGAGTGTTGGGTTGGCGCCTTTACCACCCGGAAACTCCCAA 101518 ||||| || | | ||||| ||||| ||||| |||||||| || |||||||| Sbjct 114302 CCGTCG---TCAGGGCTACCGAGATCAGGGTTAGCGCCCTTACCACCAGGGAACTCCCAG 114358 Query 101519 TCGATGTCTACCCCGTCAAAAAATTTCCAAACCTGCAAAAATTCTTTGACAGAATCCACA 101578 |||||||| || ||||| || |||||||| | | || || || ||||| || || Sbjct 114359 TCGATGTCCACTCCGTCGAAGAATTTCCAGGTTTCAAGGAAGTCCTTAACAGAGTCGACG 114418 Query 101579 AACACACGCCGTTTTATCGCGTC-GTGCATATAATAGAACGGGTCGGACAATGTCCAGCC 101637 || || || | | ||| ||| | | | |||| || || | ||| |||||||| Sbjct 114419 AAGCGCTTCCTCTTAACCTTGTCAGTGAAGA-AGAAGAATGGATCAGCCAAGGTCCAGCC 114477 Query 101638 GCCGATGGACGGCAAAATTTTAAGGTGTGGATTGGCCAATTTGGCCGCCATTAGCTGACC 101697 || | ||| || || || || |||| || | ||| ||| | ||| ||||| || Sbjct 114478 ACCAACGGAAGGTAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAACATCATCAGCTGGCC 114537 Query 101698 AAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTTTTGTATTGC 101757 ||||| || |||||||| || ||||| | | | ||| || || ||||| || | || Sbjct 114538 GAAGTTACCCTTGTAGGGTTCATTCCAGGACGCCAAACCCTTTTGTGGTTTCTGAAGAGC 114597 Query 101758 GGCCCAAGGATCGTGGATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAACGTTGCAA 101817 |||||||| |||||||| | ||||| || ||| | ||| ||| || ||||||| Sbjct 114598 TGCCCAAGGGTCGTGGATCGATACTTTGAAGTCTTCCCTGCCGCTGCAGGATCGTTGCAG 114657 Query 101818 CGCTTCAAAACTACCGGGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCCGCCACAAAT 101877 |||| ||||| || || ||| | |||||| | |||||| || || || || Sbjct 114658 AGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCCATCTCCACCGCAGAT 114717 Query 101878 GGGTATGAACCCGTACAACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTCCACCGGAAA 101937 || ||||| ||||||| | ||| | || || || | || || ||| || || || Sbjct 114718 TGGGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTACGCGGTCGACGGGGAA 114777 Query 101938 GTTGCGACCATACACGCCCCATTCTACAAAATACGC 101973 || | || ||||||||||| || || || || Sbjct 114778 CTTCCTGGGGTAGACGCCCCATTCGACGAAGTAAGC 114813 >seq278 Length=307000 Score = 131 bits (144), Expect = 1e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 23538 TGCACGTAGTCGTAGCCCTTTACGAGCCGCACGTATGTGCAGCGATCAAACCAACGTGCG 23597 || ||||| ||| |||||| || ||| ||||||| | |||||| || ||||| || ||| Sbjct 238811 TGTACGTACTCGCGGCCCTTCACCAGCTGCACGTAGGCGCAGCGGTCGAACCAGCGCGCG 238870 Query 23598 TGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGAAAA 23657 || | |||||| ||| |||| ||||||||||||| | ||||| ||||||| ||| Sbjct 238871 TGCTGTTCCCAGGGCACGTCATCATTTTCCCAGTCTTTCAAACCGCCATCGCAATAGAAA 238930 Query 23658 CATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCTGGC 23717 || ||| | | || |||| |||||||| | ||||| ||||| || | || |||||| Sbjct 238931 CACTTGGTCTTATCCCCCTGACCGGTGTAGAAGAAACCAGCTTCGGCAAGTTCCTCTGGT 238990 Query 23718 TTTTG 23722 ||||| Sbjct 238991 TTTTG 238995 >seq12 Length=2918994 Score = 89.7 bits (98), Expect = 4e-13 Identities = 168/246 (68%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 19963 AAATATATTTTATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTT 20022 |||| |||||| | | |||| |||| ||||| | || ||||| ||||| ||||| || Sbjct 2849727 AAATCTATTTTTT-ACATTCCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTT 2849785 Query 20023 TTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAG 20082 ||| || ||||||||| | ||| ||||| | || ||||| || |||| | Sbjct 2849786 TTGAATATTGTAATCGGAAAGAGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAA 2849845 Query 20083 CCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAAC 20142 || |||||||| || | || || || || |||||| |||||| | ||| Sbjct 2849846 TCTTTGTTGATCTGGTGGAATTCCCTCCTTATCTTGAATTTTGGCTTTCACGTTTTCAAT 2849905 Query 20143 AGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAAT 20202 | || ||||| ||| | ||||||||||| || || || ||||| |||||||| Sbjct 2849906 TGTGTCAGAGGGTTCAACTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAAT 2849965 Query 20203 TTGCAT 20208 |||||| Sbjct 2849966 TTGCAT 2849971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || |||||||||||||| |||||||| || || || | ||||| || || Sbjct 2423264 TGGAGCGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTGCGACCGTCTTCTAACTGC 2423205 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || || | || || | ||| ||||| ||| | |||||||||||| |||||| Sbjct 2423204 TTTCCAGCGAAGATCAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGAATTTTG 2423145 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 ||| || | ||| || ||| || || ||| | || || ||||| || ||| Sbjct 2423144 GCTTTTACATTTTCAATAGTGTCGGATGGCTCAACTTCAAGAGTGATAGTTTTACCCGTC 2423085 Query 20186 AACGTTTTGACAAAAATTTGCATT 20209 || ||||| |||||||| |||||| Sbjct 2423084 AAGGTTTTCACAAAAATCTGCATT 2423061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||| | ||| || ||||| || || || || ||||| ||| | ||| ||| Sbjct 2852937 CAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGTCCATC 2852996 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| || || | || | |||||||||||| || | |||||| || || Sbjct 2852997 TTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGAATGCCTTCCTTATC 2853056 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||||||| ||| || | ||| | ||| |||||| || | || ||||| Sbjct 2853057 TTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCACCTCTAATGTTATGGT 2853116 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 ||| || ||||| || || ||||| || ||||| || Sbjct 2853117 TTTCCCCGTCAAAGTCTTCACAAAGATCTGCATGTT 2853152 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA--TCTT 20057 || || ||||| || ||||| ||||| || ||||||||| | ||| | || |||| Sbjct 2850219 ACTAAGTGTAGAGTGGATTCCTTTTGAATATTGTAATCGG--AAAGTGTGCGACCGTCTT 2850276 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 ||| |||||||| || | || | | ||| ||||| || | ||||| ||||| Sbjct 2850277 CCAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGTGGAATACCTTCCTTGTCCT 2850336 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 ||||| ||| || | ||| || ||| ||||| ||| | ||| || || | Sbjct 2850337 GGATTTTGGCTTTAACATTTTCAATAGTGTCGGAGGGTTCAACTTCTAGGGTGATAGTCT 2850396 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||||| |||||||| || |||||||| Sbjct 2850397 TGCCGGTCAAGGTTTTGACGAAGATTTGCAT 2850427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419582101622157