Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq434 167 2e-36 seq12 95.1 1e-14 >seq434 Length=190249 Score = 167 bits (184), Expect = 2e-36 Identities = 486/737 (66%), Gaps = 31/737 (4%) Strand=Plus/Minus Query 30220 GTGGTGGCCGGTTACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGACTTA 30279 || || | || |||||| || || ||||| || ||| ||| | | || | ||| Sbjct 114822 GTTGTTGGCGCTTACTTCGTCGAATGGGGCGTCTACCCCAGGAAGTTCCCCGTCGACCGC 114763 Query 30280 GTTCCCGTCCCCAACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGAT 30339 || ||| |||| || ||||| |||||| |||| || || | || |||||||||||||| Sbjct 114762 GTACCCATCCCGAATCTTACCCATCTTCTGTACGGTTTCATCCCAATCTGCGGTGGAGAT 114703 Query 30340 GGTATAAACGATAGCTT-AAAGCAAGTGCCGGGTTCGTTT-GAGGCTTTACAAAAATCTT 30397 || || ||||| || || |||| || | || |||| | ||| | ||| ||| | Sbjct 114702 GGCATCAACGACAGTTTGAAAGAAATCGAAGG--CAGTTTCCAAGCTCTGCAACGATCCT 114645 Query 30398 GCGCGGGTCGAGAGGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAAC 30457 || || | || || || ||||| |||| ||||| ||||| |||||||| |||| Sbjct 114644 GCAGCGGCAGGGAAGACTTCAAAGTATCGATCCACGACCCTTGGGCAGCTCTTCAGAAAC 114585 Query 30458 CACAAAAAGGAGTGGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGG 30517 ||||||| || ||| | ||| | || || || || || || || ||||| |||||| Sbjct 114584 CACAAAAGGGTTTGGCGTCCTGGAATGAACCCTACAAGGGTAACTTCGGCCAGCTGATGA 114525 Query 30518 CGATTAAA-AGACACAATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTT 30576 | | ||| || || | || ||||| | ||| ||||| || |||| || ||||| ||| Sbjct 114524 TGTTGAAACAGGCA-AGACCTGACCTGAAGATCTTACCTTCCGTTGGTGGCTGGAC-CTT 114467 Query 30577 AGC-GACCCTTTCTT----TAAATTGA----GTTCTGCCGAAAATCGCGCCGTTTTCGTT 30627 || || || ||||| | | ||| ||| | ||| |||| ||||| Sbjct 114466 GGCTGATCCATTCTTCTTCTTCACTGACAAGGTTAAGAGGAA----GCGC----TTCGTC 114415 Query 30628 GAGTCCGCACGAGAGTATTTGCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGG 30687 || || | || | | || |||||||| || |||||| | |||||||||||| Sbjct 114414 GACTCTGTTAAGGACTTCCTTGAAACCTGGAAATTCTTCGACGGAGTGGACATCGACTGG 114355 Query 30688 GAGTTTCCGGGCGGTAAAGGTGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTA 30747 ||||| || || ||||| || ||||| || || | || || || | | || Sbjct 114354 GAGTTCCCTGGTGGTAAGGGCGCTAACCCTGATCTCGGTAGCCCTGACGACG-----GTC 114300 Query 30748 ACA--TATGTGCAGTTATTGAAAGAGCTCAGAGAAATGCTAAACGATCTTTCTAAAGAAA 30805 ||| || || || | |||| || || ||||| ||||| ||||| || ||| | | Sbjct 114299 ACATCTACGTCGAGCTGATGAAGGAACTGAGAGAGATGCTCAACGAGCTGTCTGCCAAGA 114240 Query 30806 CAGGGAAAAAATACCAGCTCACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAG 30865 |||| || |||||| | || || || || || ||| | || | || || || | | Sbjct 114239 CAGGCAAGAAATACGAACTGACTTCAGCCATCAGCTCTGGTTGGGACAAGATTCAGGTGG 114180 Query 30866 TTAATTATGAAAATGCGCAAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTA 30925 | | || | || ||| |||| | |||||||| || | |||| || || || | Sbjct 114179 TAGACTACAAGGCGGCTCAACAGTACATGGATCACATCTTCTTGATGAGCTATGACTTCA 114120 Query 30926 AAGGCGCTTGGTCTAAC 30942 | || |||||||| ||| Sbjct 114119 AGGGAGCTTGGTCAAAC 114103 >seq12 Length=2918994 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | || || ||||| || || ||| || ||||||||||| |||| Sbjct 2423973 ACCACCTCGCAGACGCAAGACCAAATGCAGAGTTGACTCTTTCTGAATGTTGTAGTCAGA 2423914 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || ||| | || || |||||||| ||| || | || | ||||||||| || | Sbjct 2423913 -AAGGGTACGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGG 2423855 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| ||||| ||| | | |||||||||| || |||| Sbjct 2423854 GAATTCCTTCCTTGTCTTGGATTTTAGCCTTTACGTTTTCAATGGTATCGGAAGGCTCCA 2423795 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || |||||||| ||||| || ||||| ||||||||||| Sbjct 2423794 CTTCAAGGGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATCTGCAT 2423746 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||||||||||||||| |||| | ||| | || ||||||||| Sbjct 2423492 TGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGC 2423433 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || || | ||||| || || | || ||| ||||| |||||| Sbjct 2423432 TTGCCGGCAAAGATCAACCTTTGCTGGTCTGGTGGGATACCTTCTTTGTCTTGAATTTTA 2423373 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | | || ||||| | || ||| |||| || || || ||||| || Sbjct 2423372 GCCTTAACATTCTCGATAGTATCTGAAGGCTCGACTTCGAGGGTAATTGTCTTACCAGTA 2423313 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || ||||||||||| Sbjct 2423312 AGCGTTTTAACGAAAATCTGCAT 2423290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421246081402997