Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_006636.1 Length=15876 Score E Sequences producing significant alignments: (Bits) Value seq473 298 6e-77 seq19 145 8e-31 seq378 113 5e-21 seq25 91.5 1e-14 seq43 89.7 5e-14 >seq473 Length=114250 Score = 298 bits (330), Expect = 6e-77 Identities = 307/394 (78%), Gaps = 22/394 (6%) Strand=Plus/Minus Query 6167 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6226 ||| ||||| |||| |||||||||||||||| ||||||||||| ||| ||||| Sbjct 6195 TTGCACGACTCGTGATGCGAAGCATCAGAGAGTGCATTACGATCGAAAAAAATTTTT--- 6139 Query 6227 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGGAATCAAGATA 6286 | || ||||| |||||||||||||| ||||||| ||||||||||||| |||||| || Sbjct 6138 CGCCTTATTTTGGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAAAGGAATC----TA 6083 Query 6287 TTTAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGCATACttttaaaaaattt 6346 ||| |||||||||| || ||| |||||| ||||||||||| |||||| ||||||| Sbjct 6082 TTTTGCATACTATT-TCGAGATAATTTAACGGAGATTAATTCTATACTTGCTAAAAATTA 6024 Query 6347 atttagtgcaatagaaacgg-aaaaaaacatcaaaatagtttaaaaaattttCCCGTCTG 6405 |||||||||||||||||||| ||||||| |||||||| | | || ||||||||| ||| | Sbjct 6023 ATTTAGTGCAATAGAAACGGAAAAAAAATATCAAAATTGGTCAACAAATTTTCCTGTCCG 5964 Query 6406 TCAAACGGGTATG-AACTTTGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTG 6464 ||| ||||| |||| | |||||||||| ||| |||||||| |||| || ||| Sbjct 5963 TCA----TGTATGAAACTCCGGAAACACTGTAACTTATGAAAAAATCTATTATTTGAGTA 5908 Query 6465 AAATGttttttttttAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTAT 6522 | ||||||||||||||| | || ||||| || | | | ||| |||| || Sbjct 5907 A----GTTTTTTTTTAATTCTAATCGA--CAATTGTAGATCATCGAATGCGAATGGATAA 5854 Query 6523 GTAACTCAGTGTCGTTTAATTGCAATTAATAAAA 6556 ||| | |||||||||||||| ||||||||||| Sbjct 5853 TTAATTAAGTGTCGTTTAATTATAATTAATAAAA 5820 >seq19 Length=2459183 Score = 145 bits (160), Expect = 8e-31 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 6258 TACCCTTGTTAGTTAACGGAATCAAGATATTTAGCATACTATTGTCTCGATTATTTAATG 6317 || ||||||||||||| ||||||||||||||| ||||||||||||| ||| |||||| | Sbjct 281757 TAGCCTTGTTAGTTAAAGGAATCAAGATATTTTGCATACTATTGTCGAGATAATTTAACG 281816 Query 6318 GAGATTAATTGCATACttttaaaaaatttatttagtgcaatagaaacggaaaaaa 6372 |||||||||| |||||| ||||||| ||||||||||||||||||||||| || Sbjct 281817 GAGATTAATTCTATACTTGCTAAAAATTAATTTAGTGCAATAGAAACGGAAATAA 281871 >seq378 Length=195820 Score = 113 bits (124), Expect = 5e-21 Identities = 87/103 (84%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 6168 TGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCGC 6227 || ||||| ||||| |||||||||||||||| |||||||||||| |||||| || | Sbjct 179053 TGCACGACTCATGATGCGAAGCATCAGAGAGTGCTTTACGATCGAAAAAATTTGTT---C 178997 Query 6228 CCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGT 6270 || ||||| |||||||||||||| ||||||| |||||||||| Sbjct 178996 GCCTTATTTTGGCAACTATTTTTAGTATTATAGCCTTGTTAGT 178954 >seq25 Length=2214828 Score = 91.5 bits (100), Expect = 1e-14 Identities = 83/104 (80%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 6167 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6226 ||| ||||| ||||| |||||||||||||||| ||||||| |||| ||| ||| Sbjct 144454 TTGCACGACTCATGATGCGAAGCATCAGAGAGTGCTTTACGACCGAAAAAAAAATTT--- 144398 Query 6227 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGT 6270 | || ||||| |||||||||||||| ||||||| ||| ||||| Sbjct 144397 CGCCTTATTTTGGCAACTATTTTTAGTATTATAACCTGCTTAGT 144354 >seq43 Length=1563633 Score = 89.7 bits (98), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 4313 TCCACCTTCAAACCTTTAATTTGCCTACACATTTCACAAACTTCCCCCTCTACATTCATA 4372 |||||| || | |||||| ||| ||||||||| ||||| | || | |||| ||| Sbjct 1394044 TCCACCAACATATCTTTAAATTGTGTACACATTTTACAAATCTTGGCCACCCCATTTATA 1393985 Query 4373 AATAAAGGGATTGCGCACACTTACTCGCTAAG--CAGTTACCCCACGTGAC 4421 ||||||||| |||||||||||||| |||| | |||||||||||| |||| Sbjct 1393984 AATAAAGGGGTTGCGCACACTTACCCGCTGCGCACAGTTACCCCACATGAC 1393934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50684215715129