Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq227 508 6e-140 seq235 468 5e-128 >seq227 Length=399343 Score = 508 bits (562), Expect = 6e-140 Identities = 392/470 (83%), Gaps = 33/470 (7%) Strand=Plus/Minus Query 15494 TTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTAAC 15553 |||| |||||||||| || ||| || |||| || | |||||||||||| || || | Sbjct 222619 TTTTAGAATAACTTTTAACCGGCTTTATCGATTAACTTCAAAAACTAATCCGCCTTTGAG 222560 Query 15554 ATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGAGA 15613 | ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 222559 CTTGAAAAACCACGTCGATCGCCACCAAGCTGGTCAGAATCGGTTGATTCGTTCGAGAGA 222500 Query 15614 TATCGTGAACGAAAGAAAACCGAAAAAATTGTTTTTTCGGGATTACTCCGAAATTTTCGG 15673 |||||||||||||||||| |||||||| | |||||||||||||||||||||||||| || Sbjct 222499 TATCGTGAACGAAAGAAACCCGAAAAAGT-GTTTTTTCGGGATTACTCCGAAATTTGTGG 222441 Query 15674 TTCGATCAATTAAAACCTGAAAATAACTTATGAGGATGATAAAACTGCGTCGAATGGCA- 15732 ||||| ||||||||| ||||| ||||| || ||||||||||||||||||||||| Sbjct 222440 TTCGAACAATTAAAATTGCAAAATTACTTACGATGATGATAAAACTGCGTCGAATGGTGG 222381 Query 15733 ---CCAACCGCGTGGAAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTCCA 15789 ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 222380 GTGCCAACCGCGTGAAAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGGAAATTCCA 222321 Query 15790 AAAATAGTGTTCTATGAAACTTTTATCAGACTTTTGAGCTGGGAGAGCTCAAATGCATTA 15849 |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 222320 AAAATAGTGTTCTATGAAACTTTTATCAGACTTTCGAGCTGAGAGAGCTCAAATGCATAG 222261 Query 15850 AAATATTATTTCATTGAACTCAGCGAGCTCAAAATATCACATAAATTATATTTTGTGCTT 15909 ||||||||| ||||||||||||||||||||||||||| Sbjct 222260 AAATATTAT-------------------TCAAAATATCACATAAATTATATTTTG----- 222225 Query 15910 AAAAATCTCAAAAATTTCATAAGTACAATTTTTAGCGCCCAGGAATAGAA 15959 | ||||||||| ||||||||||||||| ||||||||||||| ||| Sbjct 222224 ----AGCTCAAAAATGTCATAAGTACAATTTCAAGCGCCCAGGAATGGAA 222179 Score = 228 bits (252), Expect = 8e-56 Identities = 242/316 (77%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 1252 TCAAAAACTAATCAGCTCTTAACCATGAAAACCCCCATCGATCGCCAGCAAAAACGTTAG 1311 ||||||||||||| || || | | |||||| || | |||||||||| ||| || || Sbjct 222582 TCAAAAACTAATCCGCCTTTGAGCTTGAAAAACCACGTCGATCGCCACCAAGCTGGTCAG 222523 Query 1312 AATCGGTTGATGCGTTCGTGAGATATCGTTGTCGaaaaaaatcgaaaaaaGTGttttttt 1371 ||||||||||| |||||| |||||||||| ||||| ||| | |||||||||||||| Sbjct 222522 AATCGGTTGATTCGTTCGAGAGATATCGTGAACGAAAGAAACCCGAAAAAGTGTTTTTTC 222463 Query 1372 GTAATAACTTCGAAATTCATGGCTCGATCGATTTAATCTTGAAAATTTTTTATGGAGCTT 1431 | || ||| ||||||| ||| |||| | ||| || | |||||| ||| | | | Sbjct 222462 GGGATTACTCCGAAATTTGTGGTTCGAACAATTAAAATTGCAAAATTACTTACGATGATG 222403 Query 1432 CAAAAACTGCGTCGA----TTGCCGCCAACCGCGTGAAAATCGGTTCATTTATTCAAAAG 1487 ||||||||||||| | | ||||||||||||||||| |||| || ||||||||| Sbjct 222402 ATAAAACTGCGTCGAATGGTGGGTGCCAACCGCGTGAAAATTGGTTGATCCATTCAAAAG 222343 Query 1488 TTATTGCCGTTTGAAAATTCAAAAAATTGTG-TCT-TTAAACTGCTATTAGAGTTTTGAG 1545 ||||||| ||||| |||||| |||||| ||| ||| | ||||| ||| ||| ||| ||| Sbjct 222342 TTATTGCGGTTTGGAAATTCCAAAAATAGTGTTCTATGAAACTTTTATCAGACTTTCGAG 222283 Query 1546 CTCGAAGAGCTCAAAT 1561 || ||||||||||| Sbjct 222282 CTGAGAGAGCTCAAAT 222267 Score = 228 bits (252), Expect = 8e-56 Identities = 163/189 (86%), Gaps = 10/189 (5%) Strand=Plus/Minus Query 15771 TTGCGGTTTGAAAATTCCAAAAATAGTGTTCTATGAAACTTTTATCAGACTTTTGAGCTG 15830 |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 301435 TTGCGGTTTGGAAATTCCAAAAATAGTGTTCTATGAAACTTTTATCAGACTTTCGAGCTG 301376 Query 15831 GGAGAGCTCAAATGCATTAAAATATTATTTCATTGAACTCAGCGAGCTCAAAATATCACA 15890 |||||||||||||||| |||||||||||| ||||||||||||| |||||| ||| ||| Sbjct 301375 AGAGAGCTCAAATGCATAGAAATATTATTTCTTTGAACTCAGCGAACTCAAACTATAACA 301316 Query 15891 TAAATTATATTTTGTGCTTAAAAATCTCAAAAATTTCATAAGTACAATTTTTAGCGCCCA 15950 |||||||||||||| || | ||| | ||||||||||||||| |||||||| Sbjct 301315 TAAATTATATTTTGAGC----------CCAAATTGTCATAAGTACAATTTCAAGCGCCCA 301266 Query 15951 GGAATAGAA 15959 ||||| ||| Sbjct 301265 GGAATGGAA 301257 Score = 78.8 bits (86), Expect = 9e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 1626 AATGAGCGGGAGGTTGCAGAGATGGCCTTTAGGGTGAACCGTTTTTCTAAtttttttt 1683 ||| ||||||| ||||||| ||||||||||| |||||||||||||||||| |||||| Sbjct 222180 AATTAGCGGGAAGTTGCAGGGATGGCCTTTAAAGTGAACCGTTTTTCTAATATTTTTT 222123 Score = 78.8 bits (86), Expect = 9e-11 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 15332 GGTCAAAATCGGTTGATTCGTTCGAGAGATAGCATGAACGAAAGAAAACAGaaaaa 15387 ||||| ||||||||||||||||||||||||| | ||||||||||||| | |||||| Sbjct 222528 GGTCAGAATCGGTTGATTCGTTCGAGAGATATCGTGAACGAAAGAAACCCGAAAAA 222473 >seq235 Length=395217 Score = 468 bits (518), Expect = 5e-128 Identities = 334/381 (88%), Gaps = 12/381 (3%) Strand=Plus/Plus Query 15530 TCCAAAAACTAATCAGCTCTTAACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCA 15589 ||| ||| ||||| || || | | ||||||||||||||| |||||||||||||||| Sbjct 16650 TCCGAAACATAATCCGCCTTTGAGCTTGAAAAACCACGTCGATCGCCACCAAGCTGGTCA 16709 Query 15590 AAATCGGTTGATTCGTTCGAGAGATATCGTGAACGAAAGAAAACCGAAAAAATTGTTTTT 15649 ||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| Sbjct 16710 GAATCGGTTGATTCGTTCGAGAGATATCGTGAACGAAAGAAACCCGAAAAAGT-GTTTTT 16768 Query 15650 TCGGGATTACTCCGAAATTTTCGGTTCGATCAATTAAAACCTGAAAATAACTTATGAGGA 15709 |||||||||||||||||||| ||||||| ||||||||| || |||| ||||| Sbjct 16769 TCGGGATTACTCCGAAATTTGTGGTTCGAACAATTAAAAT-TG-------CTTACGAGGA 16820 Query 15710 TGATAAAACTGCGTCGAATGGCACCAACCGCGTGGAAATTGGTTGATCCATTCAAAAGTT 15769 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 16821 TGATAAAACTGCGTCGAATGGTGCCAACCGCGTGAAAATTGGTTGATCCATTCAAAAGTT 16880 Query 15770 ATTGCGGTTTGAAAATTCCAAAAATAGTGTTCTATGAAACTTTTATCAGACTTTTGAGCT 15829 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 16881 ATTGCGGTTTGGAAATTCCAAAAATAGTGTTCTATGAAACTTTTATCAAACTTTCGAGCT 16940 Query 15830 GGGAGAGCTCAAATGCATTAAAATATTATTTCATTGAACTCAGCGAGCTCAAAATATCAC 15889 | |||||||||||||||| |||| ||||||| ||||||||||||| ||||||||||||| Sbjct 16941 GAGAGAGCTCAAATGCATAGAAATTTTATTTCTTTGAACTCAGCGAACTCAAAATATCAC 17000 Query 15890 ATAAATTATATTTTGTGCTTA 15910 |||| || |||| | |||| Sbjct 17001 ATAATTT---TTTTCTTCTTA 17018 Score = 212 bits (234), Expect = 6e-51 Identities = 234/309 (76%), Gaps = 11/309 (4%) Strand=Plus/Plus Query 1256 AAAC-TAATCAGCTCTTAACCATGAAAACCCCCATCGATCGCCAGCAAAAACGTTAGAAT 1314 |||| ||||| || || | | |||||| || | |||||||||| ||| || ||||| Sbjct 16654 AAACATAATCCGCCTTTGAGCTTGAAAAACCACGTCGATCGCCACCAAGCTGGTCAGAAT 16713 Query 1315 CGGTTGATGCGTTCGTGAGATATCGTTGTCGaaaaaaatcgaaaaaaGTGtttttttGTA 1374 |||||||| |||||| |||||||||| ||||| ||| | |||||||||||||| | Sbjct 16714 CGGTTGATTCGTTCGAGAGATATCGTGAACGAAAGAAACCCGAAAAAGTGTTTTTTCGGG 16773 Query 1375 ATAACTTCGAAATTCATGGCTCGATCGATTTAATCTTGAAAATTTTTTATGGAGCTTCAA 1434 || ||| ||||||| ||| |||| | ||| |||||| ||| | | | | Sbjct 16774 ATTACTCCGAAATTTGTGGTTCGAACAATT--------AAAATTGCTTACGAGGATGATA 16825 Query 1435 AAACTGCGTCGATTGCCGCCAACCGCGTGAAAATCGGTTCATTTATTCAAAAGTTATTGC 1494 |||||||||||| || ||||||||||||||||| |||| || |||||||||||||||| Sbjct 16826 AAACTGCGTCGAATGGTGCCAACCGCGTGAAAATTGGTTGATCCATTCAAAAGTTATTGC 16885 Query 1495 CGTTTGAAAATTCAAAAAATTGTG-TCT-TTAAACTGCTATTAGAGTTTTGAGCTCGAAG 1552 ||||| |||||| |||||| ||| ||| | ||||| ||| | | ||| ||||| || Sbjct 16886 GGTTTGGAAATTCCAAAAATAGTGTTCTATGAAACTTTTATCAAACTTTCGAGCTGAGAG 16945 Query 1553 AGCTCAAAT 1561 ||||||||| Sbjct 16946 AGCTCAAAT 16954 Score = 78.8 bits (86), Expect = 9e-11 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 15332 GGTCAAAATCGGTTGATTCGTTCGAGAGATAGCATGAACGAAAGAAAACAGaaaaa 15387 ||||| ||||||||||||||||||||||||| | ||||||||||||| | |||||| Sbjct 16705 GGTCAGAATCGGTTGATTCGTTCGAGAGATATCGTGAACGAAAGAAACCCGAAAAA 16760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50949812653342