Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_006645.1 Length=21388 Score E Sequences producing significant alignments: (Bits) Value seq30 176 6e-40 seq262 149 9e-32 seq742 104 3e-18 >seq30 Length=2040923 Score = 176 bits (194), Expect = 6e-40 Identities = 131/153 (86%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 178 TTGTTCAAATAAACGATAGAAATGAATTTATGTTAATAAACCATTACAAACTCAAtttgt 237 |||||||||| |||||||||||| || |||| |||||||| ||||||||||||||||| | Sbjct 1834624 TTGTTCAAATGAACGATAGAAATTAACTTATATTAATAAATCATTACAAACTCAATTTAT 1834683 Query 238 tttaatataatatttttaaaactcaacaaaaatatggttataatattgttattttttata 297 ||| |||| | |||||| |||||||||||| |||||||||||| || ||||||| Sbjct 1834684 TTTCATATGTTTTTTTTACAACTCAACAAAAGTATGGTTATAAT----GTAACTTTTATA 1834739 Query 298 aattAATTCAAATGTTAACTGGCCAAACACGGT 330 | ||||||||||||||||||| ||||| ||||| Sbjct 1834740 AGTTAATTCAAATGTTAACTGACCAAAAACGGT 1834772 >seq262 Length=322195 Score = 149 bits (164), Expect = 9e-32 Identities = 143/186 (77%), Gaps = 12/186 (6%) Strand=Plus/Plus Query 131 AGGGTAGAAGTACCGTTTGTGGCCACTNNNNNNNNNNNNNNNNTTTATTGTTCAAATAAA 190 ||||||||| |||||||||||||||| ||| |||||||||||| Sbjct 137487 AGGGTAGAATGACCGTTTGTGGCCACTGTACTGCTTTTGGCCATTT--TGTTCAAATAAA 137544 Query 191 CGATAGAAATGAATTTATGTTAATAAACCATTACAAACTCAAtttgttttaatataatat 250 ||||||||||| |||||| ||||||| ||||| |||||| ||||||||| || | Sbjct 137545 CGATAGAAATGCATTTATAGTAATAAATCATTA------CAATTTATTTTAATATGAT-T 137597 Query 251 ttttaaaactcaacaaaaatatggttataatattgttattttttataaattAATTCAAAT 310 ||||| |||| |||||||||||||| |||||| | ||| |||||||||||| ||||| Sbjct 137598 TTTTACAACT---CAAAAATATGGTTACAATATTATATTTTCTTATAAATTAATCCAAAT 137654 Query 311 GTTAAC 316 |||||| Sbjct 137655 GTTAAC 137660 >seq742 Length=30607 Score = 104 bits (114), Expect = 3e-18 Identities = 135/183 (74%), Gaps = 24/183 (13%) Strand=Plus/Plus Query 175 TTATTGTTCAAATAAACGATAGAAATGAATTTATGTTAATAAACCATTACAAACTCAAtt 234 || |||||| ||| ||||||||||||| |||||| ||||||| ||||||||||| | | Sbjct 4506 TTCTTGTTCTAATGAACGATAGAAATGTATTTAT-ATAATAAATCATTACAAACT--AGT 4562 Query 235 tgtttta--atataat-atttttaaaactcaacaaaaatatggttataatattgttatt- 290 | ||| | |||| || ||||| ||||||| ||||||||||||||||| ||||| Sbjct 4563 TTTTTAAGTATATGATGTTTTTTTCAACTCAATGCAAATATGGTTATAATATGCTTATTA 4622 Query 291 ---------------ttttataaattAATTCAAATGTTAACTGGCCAAACACGGTGCTAA 335 | |||| ||||||| ||||||||| | || ||| |||||||||| Sbjct 4623 ATGGCGTAATATGCGTATTATTTATTAATT-AAATGTTAA-TAGCTAAAAACGGTGCTAA 4680 Query 336 GGT 338 ||| Sbjct 4681 GGT 4683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 68322412382961