Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_006646.1 Length=31972 Score E Sequences producing significant alignments: (Bits) Value seq227 123 5e-24 seq235 91.5 3e-14 >seq227 Length=399343 Score = 123 bits (136), Expect = 5e-24 Identities = 106/131 (81%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 22921 GGTTCATTTGGAATAACTTTTTAATGACTTTACCGATCGATTCCAAAAACTAATCAGCCC 22980 |||| ||| ||||||||||| | | ||||| |||| | | |||||||||||| ||| Sbjct 222624 GGTTGTTTTAGAATAACTTTTAACCGGCTTTATCGATTAACTTCAAAAACTAATCCGCCT 222565 Query 22981 TTAACCTCGAAAAACCACGTCGATTGCCACCGGCCCGGCCAGAATCGGTTGATTCGTTCC 23040 || | || |||||||||||||||| |||||| | || |||||||||||||||||||| Sbjct 222564 TTGAGCTTGAAAAACCACGTCGATCGCCACCAAGCTGGTCAGAATCGGTTGATTCGTTCG 222505 Query 23041 GGAGATATCGT 23051 |||||||||| Sbjct 222504 AGAGATATCGT 222494 Score = 82.4 bits (90), Expect = 2e-11 Identities = 80/103 (78%), Gaps = 9/103 (9%) Strand=Plus/Minus Query 23702 CAGTCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCT 23761 || |||||||||||||| ||||| |||||| |||||| ||||| ||||||||| | Sbjct 222352 CATTCAAAAGTTATTGCGGTTTGGAAATTCCAAAAATA----GTGTTCTATGAAACTTTT 222297 Query 23762 ATCAGACTTTTGAGCTTAAATTAAAAAGCTCAAAAGCGTAGAA 23804 |||||||||| |||| | | | |||||||| || ||||| Sbjct 222296 ATCAGACTTTCGAGC-----TGAGAGAGCTCAAATGCATAGAA 222259 >seq235 Length=395217 Score = 91.5 bits (100), Expect = 3e-14 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 22962 TCCAAAAACTAATCAGCCCTTAACCTCGAAAAACCACGTCGATTGCCACCGGCCCGGCCA 23021 ||| ||| ||||| ||| || | || |||||||||||||||| |||||| | || || Sbjct 16650 TCCGAAACATAATCCGCCTTTGAGCTTGAAAAACCACGTCGATCGCCACCAAGCTGGTCA 16709 Query 23022 GAATCGGTTGATTCGTTCCGGAGATATCGT 23051 |||||||||||||||||| |||||||||| Sbjct 16710 GAATCGGTTGATTCGTTCGAGAGATATCGT 16739 Score = 80.6 bits (88), Expect = 5e-11 Identities = 91/122 (75%), Gaps = 9/122 (7%) Strand=Plus/Plus Query 23702 CAGTCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCT 23761 || |||||||||||||| ||||| |||||| |||| ||||||| ||||||||| | Sbjct 16869 CATTCAAAAGTTATTGCGGTTTGGAAATTCCAAAAA----TAGTGTTCTATGAAACTTTT 16924 Query 23762 ATCAGACTTTTGAGCTTAAATTAAAAAGCTCAAAAGCGTAGAACAGCTATCTTTTTGAGC 23821 |||| ||||| |||| | | | |||||||| || ||||| ||| | ||||| | Sbjct 16925 ATCAAACTTTCGAGC-----TGAGAGAGCTCAAATGCATAGAAATTTTATTTCTTTGAAC 16979 Query 23822 TC 23823 || Sbjct 16980 TC 16981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102187590148476