Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_006647.1 Length=8785 Score E Sequences producing significant alignments: (Bits) Value seq473 271 4e-69 seq227 168 4e-38 seq19 131 9e-27 seq378 127 1e-25 seq25 105 4e-19 >seq473 Length=114250 Score = 271 bits (300), Expect = 4e-69 Identities = 213/252 (85%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 222 GTTCCATAAATGACGGACAGGAAAAttttttgacctattttgatgttttttttC-GTTTC 280 ||| |||| ||||||||||||||||||| |||||| |||||||| ||||||||| ||||| Sbjct 5951 GTTTCATACATGACGGACAGGAAAATTTGTTGACCAATTTTGATATTTTTTTTCCGTTTC 6010 Query 281 TAGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACA 340 || |||||||||| ||||||| |||| | |||||||||| ||||||||||| || | Sbjct 6011 TATTGCACTAAATTAATTTTTAGCAAGTATAGAATTAATCTCCGTTAAATTATCTCGA-A 6069 Query 341 ATAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTG 400 ||||||||||||||| || ||| | |||||||||| ||||||| | |||||||||| Sbjct 6070 ATAGTATGCAAAATA----GATTCCTTTAACTAACAAGGCTATAATACTAAAAATAGTTG 6125 Query 401 CCGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATG 460 || |||| ||| |||||| |||||||||||||| ||||||||||||| ||| ||||| | Sbjct 6126 CCAAAATAAGGCGAAAAATTTTTTTCGATCGTAATGCACTCTCTGATGCTTCGCATCACG 6185 Query 461 AGTCATGCAATA 472 |||| ||||||| Sbjct 6186 AGTCGTGCAATA 6197 >seq227 Length=399343 Score = 168 bits (186), Expect = 4e-38 Identities = 132/158 (84%), Gaps = 11/158 (7%) Strand=Plus/Plus Query 8355 aaaaaaaaaTTAGAAAAATGATTCACTCTGCAA--CTTCCCGCTAATTCCATTCCTGGGC 8412 |||||||||||||||||| | |||||| | | | ||||||||||||||||||||||| Sbjct 301211 AAAAAAAAATTAGAAAAACGGTTCACTTTAAAGGCCATCCCGCTAATTCCATTCCTGGGC 301270 Query 8413 GCTTAAAATTGTACTTATGACATTTTTGAGTTTTTAAGCTCAAAATATAATTTATGTGTT 8472 |||| ||||||||||||||||| ||| | |||||||||||||||||||| | Sbjct 301271 GCTTGAAATTGTACTTATGACAATTTGG---------GCTCAAAATATAATTTATGTTAT 301321 Query 8473 ATTTTGAGCTCGCTGAGTTCTAAGAAATAATATTTCTA 8510 | |||||| ||||||||||| ||||||||||||||||| Sbjct 301322 AGTTTGAGTTCGCTGAGTTCAAAGAAATAATATTTCTA 301359 Score = 141 bits (156), Expect = 5e-30 Identities = 112/138 (81%), Gaps = 21/138 (15%) Strand=Plus/Plus Query 8355 aaaaaaaaaTTAGAAAAATGATTCACT-------------CTGCAACTTCCCGCTAATTC 8401 ||||||| |||||||||| | |||||| |||||||||||||||||||| Sbjct 222122 AAAAAAATATTAGAAAAACGGTTCACTTTAAAGGCCATCCCTGCAACTTCCCGCTAATTC 222181 Query 8402 CATTCCTGGGCGCTTAAAATTGTACTTATGACATTTTTGAGTTTTTAAGCTCAAAATATA 8461 ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 222182 CATTCCTGGGCGCTTGAAATTGTACTTATGACATTTTTG--------AGCTCAAAATATA 222233 Query 8462 ATTTATGTGTTATTTTGA 8479 ||||||||| |||||||| Sbjct 222234 ATTTATGTGATATTTTGA 222251 >seq19 Length=2459183 Score = 131 bits (144), Expect = 9e-27 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 268 tttttttCGTTTCTAGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTA 327 || ||| |||||||| |||||||||| ||||||| |||| | |||||||||| ||| Sbjct 281871 TTATTTCCGTTTCTATTGCACTAAATTAATTTTTAGCAAGTATAGAATTAATCTCCGTTA 281812 Query 328 AATTATCTTGACAATAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTA 382 |||||||| ||||||||||||||||||||||||| ||| | |||||||||| ||| Sbjct 281811 AATTATCTCGACAATAGTATGCAAAATATCTTGATTCCTTTAACTAACAAGGCTA 281757 >seq378 Length=195820 Score = 127 bits (140), Expect = 1e-25 Identities = 90/103 (87%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 370 ACTAACAAGACTATAATGATGAAAATAGTTGCCGAAATGAGGTGaaaaaaaTTTTTCGAT 429 ||||||||| ||||||| | |||||||||||| |||| ||| ||| ||| ||||||||| Sbjct 178954 ACTAACAAGGCTATAATACTAAAAATAGTTGCCAAAATAAGGCGAACAAATTTTTTCGAT 179013 Query 430 CGTAAAGCACTCTCTGATGTTTCTCATCATGAGTCATGCAATA 472 ||||||||||||||||||| ||| ||||||||||| |||| || Sbjct 179014 CGTAAAGCACTCTCTGATGCTTCGCATCATGAGTCGTGCATTA 179056 >seq25 Length=2214828 Score = 105 bits (116), Expect = 4e-19 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 370 ACTAACAAGACTATAATGATGAAAATAGTTGCCGAAATGAGGTGaaaaaaaTTTTTCGAT 429 ||||| || |||||| | |||||||||||| |||| ||| |||| ||||||| | Sbjct 144354 ACTAAGCAGGTTATAATACTAAAAATAGTTGCCAAAATAAGGCGAAATTTTTTTTTCGGT 144413 Query 430 CGTAAAGCACTCTCTGATGTTTCTCATCATGAGTCATGCAATA 472 ||||||||||||||||||| ||| ||||||||||| ||||||| Sbjct 144414 CGTAAAGCACTCTCTGATGCTTCGCATCATGAGTCGTGCAATA 144456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27996485980892