Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_006648.1 Length=15158 Score E Sequences producing significant alignments: (Bits) Value seq473 280 1e-71 seq19 136 4e-28 seq378 113 4e-21 seq25 91.5 1e-14 >seq473 Length=114250 Score = 280 bits (310), Expect = 1e-71 Identities = 324/428 (76%), Gaps = 24/428 (6%) Strand=Plus/Minus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| |||| |||||||||||||||| ||||||||||| ||| ||||| Sbjct 6195 TTGCACGACTCGTGATGCGAAGCATCAGAGAGTGCATTACGATCGAAAAAAATTTTT--- 6139 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATA 6922 | || ||||| |||||||||||||| ||||||| ||||||||||||| | |||| || Sbjct 6138 CGCCTTATTTTGGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAAAGGAATC----TA 6083 Query 6923 TTAAGCATACTATTGTCTCGATTATTTAATGGAGATTAATTGGATACttttaaaaaattt 6982 || |||||||||| || ||| |||||| ||||||||||| |||||| ||||||| Sbjct 6082 TTTTGCATACTATT-TCGAGATAATTTAACGGAGATTAATTCTATACTTGCTAAAAATTA 6024 Query 6983 atttagtgcaatagaaacgg-aaaaaaacatcaaaatagtttaaaaaattttCCCGTCCG 7041 |||||||||||||||||||| ||||||| |||||||| | | || ||||||||| ||||| Sbjct 6023 ATTTAGTGCAATAGAAACGGAAAAAAAATATCAAAATTGGTCAACAAATTTTCCTGTCCG 5964 Query 7042 TCAAACGGATATGAACCT-TGTAAACACTGTAGCTTGCCAAAAAATCCATTAATTCAGTG 7100 ||| |||||| || | |||||||||| ||| |||||||| |||| || ||| Sbjct 5963 TCA----TGTATGAAACTCCGGAAACACTGTAACTTATGAAAAAATCTATTATTTGAGT- 5909 Query 7101 AAATGTTNNNNNNNNNAATTCT--TTGAAGGAATTGCAGGCCCCCTACCGCGGATGGCTA 7158 || | || |||||| | || ||||| || | | | ||| |||| || Sbjct 5908 AAGTTTT----TTTTTAATTCTAATCGA--CAATTGTAGATCATCGAATGCGAATGGATA 5855 Query 7159 TGTAACTCAGTGTCGTTTAATTGCAATTAATAAAATaaaaaaaCCAAAAGACTGTATATC 7218 ||| | |||||||||||||| ||||||||||| | | ||| | |||| |||||||| Sbjct 5854 ATTAATTAAGTGTCGTTTAATTATAATTAATAAAA-ACGACAACTACAAGATTGTATATC 5796 Query 7219 TTTATATA 7226 |||||| Sbjct 5795 GATATATA 5788 >seq19 Length=2459183 Score = 136 bits (150), Expect = 4e-28 Identities = 99/115 (86%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 6894 TACCCTTGTTAGTTAACGAAATCAAGATATTAAGCATACTATTGTCTCGATTATTTAATG 6953 || ||||||||||||| | |||||||||||| ||||||||||||| ||| |||||| | Sbjct 281757 TAGCCTTGTTAGTTAAAGGAATCAAGATATTTTGCATACTATTGTCGAGATAATTTAACG 281816 Query 6954 GAGATTAATTGGATACttttaaaaaatttatttagtgcaatagaaacggaaaaaa 7008 |||||||||| |||||| ||||||| ||||||||||||||||||||||| || Sbjct 281817 GAGATTAATTCTATACTTGCTAAAAATTAATTTAGTGCAATAGAAACGGAAATAA 281871 >seq378 Length=195820 Score = 113 bits (124), Expect = 4e-21 Identities = 87/103 (84%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 6804 TGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCGC 6863 || ||||| ||||| |||||||||||||||| |||||||||||| |||||| || | Sbjct 179053 TGCACGACTCATGATGCGAAGCATCAGAGAGTGCTTTACGATCGAAAAAATTTGTT---C 178997 Query 6864 CCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGT 6906 || ||||| |||||||||||||| ||||||| |||||||||| Sbjct 178996 GCCTTATTTTGGCAACTATTTTTAGTATTATAGCCTTGTTAGT 178954 >seq25 Length=2214828 Score = 91.5 bits (100), Expect = 1e-14 Identities = 83/104 (80%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| ||||| |||||||||||||||| ||||||| |||| ||| ||| Sbjct 144454 TTGCACGACTCATGATGCGAAGCATCAGAGAGTGCTTTACGACCGAAAAAAAAATTT--- 144398 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGT 6906 | || ||||| |||||||||||||| ||||||| ||| ||||| Sbjct 144397 CGCCTTATTTTGGCAACTATTTTTAGTATTATAACCTGCTTAGT 144354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48386642201431