Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq58 100 6e-17 seq19 100 6e-17 >seq58 Length=1381630 Score = 100 bits (110), Expect = 6e-17 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 7268 ATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGAC 7327 ||| ||| || || |||||||| || ||||||||||| |||| ||| ||||||||||| Sbjct 1079208 ATGACATATCAGTGTTGACATGTTCTTCATAAATATGTTTCAAATTAATTTCATCTTGTT 1079149 Query 7328 GGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAG 7387 || || | | ||||| ||||| || | || | || || || ||| ||||| | Sbjct 1079148 TAAAAAGTATAATTAAGTTAGCATTGTCCCGAACTAACTGTTTAGGAATTTTAGTATATG 1079089 Query 7388 TTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTG 7446 |||| ||||| || | |||| | || |||| ||||| ||| || || | Sbjct 1079088 TTTGGTTAAGATAAAAACAATCAATACATTTATGTCTTCCCATCGCA-AAGTAATCACGC 1079030 Query 7447 ATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCA 7506 || | | || ||||| ||||||||||| |||||||| |||| || ||||| || || Sbjct 1079029 ATATTGTTTTGGTTTTCGCAAGCAACATCATCAAATATGATCACAGAATTAGGTTTTGCC 1078970 Query 7507 TC 7508 || Sbjct 1078969 TC 1078968 Score = 82.4 bits (90), Expect = 1e-11 Identities = 91/118 (77%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 6187 TCTTCAATAATTGACATGATTTCATTCGTGTGACTT--GGGTTTCCAGCAGCTTGAGATG 6244 |||||||| || || || |||||||| || | ||| | ||| |||||| || |||| | Sbjct 1080261 TCTTCAATGATAGATATAATTTCATT-GT-TAACTCCAGTGTTACCAGCATCTCGAGAAG 1080204 Query 6245 CCATCAGTAGTCGCAAACGATCAACTAGCTCATTTGGATCATCCCAGTAAACATAATC 6302 | ||||||| | || | ||| ||||| ||||||||||||||||| || ||| |||| Sbjct 1080203 CTATCAGTAATTTTAACCTATCCACTAGTTCATTTGGATCATCCCAATATACAAAATC 1080146 >seq19 Length=2459183 Score = 100 bits (110), Expect = 6e-17 Identities = 316/480 (66%), Gaps = 11/480 (2%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 ||||| || |||||||||||||| | ||| | |||||||| ||| | | ||||| Sbjct 1318825 ACATGCTCTTCATAAATATGCTTTAAATTTACATCATCTTGTTTGAATATAATAAGAAAA 1318884 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || |||| || | | || ||||| || ||| | |||||||||| | | |||||| Sbjct 1318885 TTAACATTGTCACGTAACAATTGCTTCGGAATTTTAGAATAAGTTTGAGATAAATAGAAA 1318944 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | ||| | | || |||| |||||| |||||| || ||| | || |||||| Sbjct 1318945 CAGTCTATTTGTTTATGTCTACCCATACAGAAATAATTGCGGATATTTATTTGATTTTCA 1319004 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCA---GGCTTGATT 7521 || |||||||| ||||| || | | || || ||| | | ||||| || ||| Sbjct 1319005 CATGCAACATCATCAAAAATAAATACAGAATT-TGCTAA--AGCTTCACTCGGAGAAATT 1319061 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAAT-ACCATCAATCTGTTTAAGCAGTGT 7580 ||| ||| || || |||| | | || ||| | || ||| ||||| | Sbjct 1319062 ACATCTTTATCATCATTGAACTCGTAAAAGTTAATCTGCGGCACTCTTTTTAATACTTCA 1319121 Query 7581 CTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAA 7640 || || ||| |||| |||| ||| | || || ||||||||||| | ||| | || Sbjct 1319122 GTCAAGAAAC-GATATTTTGATTGAAAAGAAGTTTTCGAGTAAAGATAAAGATTTTGGAA 1319180 Query 7641 CCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGA 7700 | ||||| ||| |||||| | | | | || ||||| || || ||||| || || Sbjct 1319181 TTTTAAACCATTTTCATGTACCAGTAAACTAATCATGGCATTAGTTTTACCACAATTGGA 1319240 Query 7701 TGGCCCGCAAAACACTGCAT-GGATACTGTTGGGAAGTAAAGCACCGTGTC-GTTTGAGC 7758 || ||||| | | | ||| | || | || || | |||||||| ||||| | |||||| Sbjct 1319241 AGGACCGCATATTA-TACATCGAATCGTATTAGGCAATAAAGCACTGTGTCTGATTGAGC 1319299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97973240044338