Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_006660.1 Length=20197 Score E Sequences producing significant alignments: (Bits) Value seq227 509 2e-140 seq235 378 9e-101 >seq227 Length=399343 Score = 509 bits (564), Expect = 2e-140 Identities = 421/526 (80%), Gaps = 33/526 (6%) Strand=Plus/Plus Query 9502 aaaaaaaaTTAGAAAAACGGTTCACCCTAAAGGCCATCCGTGCAACTTCCCGCTAATTCT 9561 |||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 222123 AAAAAATATTAGAAAAACGGTTCACTTTAAAGGCCATCCCTGCAACTTCCCGCTAATTCC 222182 Query 9562 ATTCCTGGGCGCTAAAAATTGTACTTATGACATTTTTGAGATTTTTAAGCACAAAATATA 9621 ||||||||||||| ||||||||||||||||||||||||| | ||||||||| Sbjct 222183 ATTCCTGGGCGCTTGAAATTGTACTTATGACATTTTTGAGCT---------CAAAATATA 222233 Query 9622 ATTTATGTGATATTTTGAGCTCGCTCAGTTCAATGAAATAATATTTTAATGCATTTGAGC 9681 |||||||||||||||||| ||||||||| |||||||||||| Sbjct 222234 ATTTATGTGATATTTTGA-------------------ATAATATTTCTATGCATTTGAGC 222274 Query 9682 TCTCCCAGCTCAAAAGTGTGATAGAAGTTTCATAGAACACTATTTTTGGAATTTTCAAAC 9741 |||| |||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||| Sbjct 222275 TCTCTCAGCTCGAAAGTCTGATAAAAGTTTCATAGAACACTATTTTTGGAATTTCCAAAC 222334 Query 9742 CGCAATAACTTTTGAATGGATCAACCAATTTCCACGCGGTTGG----TGCCATTCGACGC 9797 ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 222335 CGCAATAACTTTTGAATGGATCAACCAATTTTCACGCGGTTGGCACCCACCATTCGACGC 222394 Query 9798 AGTTTTATCATCCTCATAAGTTATTTTCAGGTTTTAATTGATCGAACCGAAAATTTCGGA 9857 |||||||||||| || ||||| ||||| ||||||||| ||||||| |||||||||| Sbjct 222395 AGTTTTATCATCATCGTAAGTAATTTTGCAATTTTAATTGTTCGAACCACAAATTTCGGA 222454 Query 9858 GTAATCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTCACGATATCTCTCGAACGAAT 9917 ||||||||| ||||||||||||||||||||||||| Sbjct 222455 GTAATCCCG-AAAAAACACTTTTTCGGGTTTCTTTCGTTCACGATATCTCTCGAACGAAT 222513 Query 9918 CAACCGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTTTTTGATGTTAAGAGCTGATT 9977 ||||||||| |||||||||||||||| ||||||||||||||| | | || || |||| Sbjct 222514 CAACCGATTCTGACCAGCTTGGTGGCGATCGACGTGGTTTTTCAAGCTCAAAGGCGGATT 222573 Query 9978 AGTTTTTGGAATTGATCGGTAGAGCTATTTAAAAGTTATTCCAAAA 10023 |||||||| | || |||| || ||| ||||||||||||| |||| Sbjct 222574 AGTTTTTGAAGTTAATCGATAAAGCCGGTTAAAAGTTATTCTAAAA 222619 Score = 268 bits (296), Expect = 1e-67 Identities = 204/245 (83%), Gaps = 21/245 (9%) Strand=Plus/Plus Query 9502 aaaaaaaaTTAGAAAAACGGTTCACCCTAAAGGCCATCCGTGCAACTTCCCGCTAATTCT 9561 ||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 301212 AAAAAAAATTAGAAAAACGGTTCACTTTAAAGGCCATCC-----------CGCTAATTCC 301260 Query 9562 ATTCCTGGGCGCTAAAAATTGTACTTATGACATTTTTGAGATTTTTAAGCACAAAATATA 9621 ||||||||||||| ||||||||||||||||| ||| | || ||||||||| Sbjct 301261 ATTCCTGGGCGCTTGAAATTGTACTTATGACAATTTGG----------GCTCAAAATATA 301310 Query 9622 ATTTATGTGATATTTTGAGCTCGCTCAGTTCAATGAAATAATATTTTAATGCATTTGAGC 9681 |||||||| ||| |||||| ||||| ||||||| |||||||||||| |||||||||||| Sbjct 301311 ATTTATGTTATAGTTTGAGTTCGCTGAGTTCAAAGAAATAATATTTCTATGCATTTGAGC 301370 Query 9682 TCTCCCAGCTCAAAAGTGTGATAGAAGTTTCATAGAACACTATTTTTGGAATTTTCAAAC 9741 |||| |||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||| Sbjct 301371 TCTCTCAGCTCGAAAGTCTGATAAAAGTTTCATAGAACACTATTTTTGGAATTTCCAAAC 301430 Query 9742 CGCAA 9746 ||||| Sbjct 301431 CGCAA 301435 >seq235 Length=395217 Score = 378 bits (418), Expect = 9e-101 Identities = 309/381 (81%), Gaps = 12/381 (3%) Strand=Plus/Minus Query 9607 TAAGCACAAAATATAATTTATGTGATATTTTGAGCTCGCTCAGTTCAATGAAATAATATT 9666 |||| | |||| || ||||||||||||||||| ||||| ||||||| ||||||| ||| Sbjct 17018 TAAGAAGAAAA---AAATTATGTGATATTTTGAGTTCGCTGAGTTCAAAGAAATAAAATT 16962 Query 9667 TTAATGCATTTGAGCTCTCCCAGCTCAAAAGTGTGATAGAAGTTTCATAGAACACTATTT 9726 | |||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||| Sbjct 16961 TCTATGCATTTGAGCTCTCTCAGCTCGAAAGTTTGATAAAAGTTTCATAGAACACTATTT 16902 Query 9727 TTGGAATTTTCAAACCGCAATAACTTTTGAATGGATCAACCAATTTCCACGCGGTTGGTG 9786 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 16901 TTGGAATTTCCAAACCGCAATAACTTTTGAATGGATCAACCAATTTTCACGCGGTTGGCA 16842 Query 9787 CCATTCGACGCAGTTTTATCATCCTCATAAGTTATTTTCAGGTTTTAATTGATCGAACCG 9846 |||||||||||||||||||||||||| |||| || ||||||||| ||||||| Sbjct 16841 CCATTCGACGCAGTTTTATCATCCTCGTAAG-------CA-ATTTTAATTGTTCGAACCA 16790 Query 9847 AAAATTTCGGAGTAATCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTCACGATATCT 9906 ||||||||||||||||||| |||||||||||||| Sbjct 16789 CAAATTTCGGAGTAATCCCG-AAAAAACACTTTTTCGGGTTTCTTTCGTTCACGATATCT 16731 Query 9907 CTCGAACGAATCAACCGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTTTTTGATGTT 9966 |||||||||||||||||||| |||||||||||||||| ||||||||||||||| | | Sbjct 16730 CTCGAACGAATCAACCGATTCTGACCAGCTTGGTGGCGATCGACGTGGTTTTTCAAGCTC 16671 Query 9967 AAGAGCTGATTAGTTTTTGGA 9987 || || ||||| ||| ||| Sbjct 16670 AAAGGCGGATTATGTTTCGGA 16650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 64511256317760