Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq33 589 3e-163 seq416 109 7e-19 seq401 82.4 1e-10 >seq33 Length=1899332 Score = 589 bits (652), Expect = 3e-163 Identities = 1205/1761 (68%), Gaps = 50/1761 (3%) Strand=Plus/Minus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || || ||||| |||| |||||||||||||||||||| || | |||| | || ||| Sbjct 686913 GCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAA 686854 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || ||| || | ||| |||| | || || || | ||| ||||| | ||||| || Sbjct 686853 TGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTC 686794 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| || || || || ||||| |||||||||| ||| | || ||| | | |||| Sbjct 686793 TGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCC 686734 Query 62196 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGA 62251 || | ||||||||| || || |||| |||||| |||| | || |||| ||||| || Sbjct 686733 CAGACAGTTTTATATAAGTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAATAGA 686675 Query 62252 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311 |||| || || || ||| || || || |||| |||||| | || ||||| Sbjct 686674 TCCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAA 686615 Query 62312 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC---TCCGAGT 62368 | ||| | | ||| ||||||| ||||| ||||| || ||||| |||| || || Sbjct 686614 ATCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTCTGA-- 686557 Query 62369 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62428 ||||| || ||| | ||||| | || |||||||||||||| ||||||||||| || Sbjct 686556 -TAAATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGA 686498 Query 62429 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTA 62486 |||||| ||||| || || | |||| |||||||||||| ||||| | ||||| Sbjct 686497 TGCAGTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACC--ATGTTTGGCAATTTTT 686440 Query 62487 TCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 62546 ||||| || | |||||||||| | || | || ||| Sbjct 686439 TCTTTGAGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGC 686380 Query 62547 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGC 62605 | ||||| | |||||| | || | ||| |||| || || || || | ||||||||| Sbjct 686379 AATATACCTTGACTGGCAGGAC-AGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGC 686321 Query 62606 TAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 62665 || |||||||| || |||| ||| || |||||||| ||||| || || | | ||||| Sbjct 686320 TAACTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAA 686261 Query 62666 ATCTTGTGCTTCCAGGCTATCAAATGG-ATAAT--TTAAGAGAATAAACGCGTCCGCTAA 62722 | |||| || || || | || ||| |||| || ||| || || ||||| Sbjct 686260 TTTAATTGCTGCCTCACTTTCGTAAGGTATACGCATTAA---AACAAATGCATCAGCTAA 686204 Query 62723 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62782 |||||| || ||||| ||||| |||| || ||| |||| ||| ||| || ||||| | Sbjct 686203 TCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCAC 686144 Query 62783 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCA-CAT 62841 ||||||||||| | ||| ||||||||||| ||||| |||| || | | | | | | Sbjct 686143 TGGATAATAATTTACATCAATAATTTTATTTAGATT-CTGAGTTATAGTCTTAGTAACTT 686085 Query 62842 CCTTCAGTTTGAGAAAATCAAATC----GCCCATCTATTACAAACATGTTCAAGGCAACA 62897 |||| | |||| |||| | || | || || | |||||||| || || |||| Sbjct 686084 CCTTTAATTTGGTGAAATTATATGTTTTGTCC-TCATTCACAAACATATTTAAAGCAATT 686026 Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 ||||| ||||| || || || || |||| | | |||| || || |||||||| Sbjct 686025 GATGCTAGATTGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCAC 685966 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 | || || || || ||||| || || || | ||| || || ||| | || || | ||| Sbjct 685965 AAGTTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCT 685906 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 |||||||| ||| ||||||| || ||||||| || | ||| ||||| |||||||| | Sbjct 685905 TTATAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGA 685846 Query 63078 ACTCGAGCCTTTATTATAGATTT--GTATCTCCTTTCTCTTTCGTATAGTGTATACAATC 63135 ||| |||| | | | | || | | | | ||| |||| ||| |||||| Sbjct 685845 ACTTGAGCTCTCACTT--GTTTCACGAAGCGACCCTCTTTTTCATATTTCTCATACAAAG 685788 Query 63136 GTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGGACACATCAAC 63194 ||| || || || |||||| || | | | | |||||||||||||| || ||||| | Sbjct 685787 CTTCAAATTCCTCACCCCAA-CAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATA 685729 Query 63195 GACCACTCTCCGTCAT--CCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63251 ||| ||| | || | ||| |||| |||||| || | ||||| ||||| | ||| Sbjct 685728 CTCCAATCT---TGATTGCTTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGC- 685673 Query 63252 ATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63310 ||| ||||| ||||||| | ||| || || || || |||||||| | ||| ||||| Sbjct 685672 ATAGAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAA 685613 Query 63311 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63370 | | ||||||| |||||| ||||| ||||||||||| | | || || | ||| || Sbjct 685612 TTCAAATATATCAGCATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATT 685553 Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||||| || |||| |||| ||| ||||| || || ||||| ||||| || | | ||| Sbjct 685552 ACCTCCTTGGTCTACATATCGAGCAGTGTTGTTGTACACTCTTAACATGGGTACTAGACC 685493 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATT 63488 || || | |||||| ||||| | ||||| |||| | || | ||| | | || | Sbjct 685492 ATTAGAGACACCATTTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGT-GTACAT 685434 Query 63489 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63548 || |||||||| || || || ||||| || | || ||| |||||||||||||||| Sbjct 685433 GA-AGACCTATCCCACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAA 685375 Query 63549 ATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63608 || ||||| ||||||||||| |||| | ||||| || ||| | ||| | || Sbjct 685374 ATTCCCTCAATGCTATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGT 685315 Query 63609 CTAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63667 |||| | || | | | ||| || ||| || || ||||| ||||||| || || || Sbjct 685314 GGAGTTGCTGC-TGAGAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAG 685256 Query 63668 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63727 |||||| || | ||||| || || || ||| ||||||| | || ||||| Sbjct 685255 ATTGTAGGTGTTTATAGCCCCCTCAATGTCTTCGCCATGTATTCCTATAGAAACTCGCAT 685196 Query 63728 TAACATGTGCTGAGGTCTTTC 63748 | ||| ||||| || ||||| Sbjct 685195 GAGCATATGCTGTGGCCTTTC 685175 >seq416 Length=155529 Score = 109 bits (120), Expect = 7e-19 Identities = 160/226 (71%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||| ||| || || ||| || || | ||| ||||| | || ||||| | Sbjct 138917 CCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCGCGCTTCT 138858 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | |||||| || || || || ||||| ||||| || ||||| ||||||||||||| Sbjct 138857 TCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACTGCAGCAAAGG 138798 Query 33446 CAATAAGTCTCTCTCCATAACCGGC------GCTGTCATGTATCCACTTTTGAGCCCAAT 33499 |||| | | ||| || | ||| |||| || |||||||| | ||||| | Sbjct 138797 CAATGATACGCTCAGCAAATGTGGCTGACTTGCTGGCA---ATCCACTTCAGGGCCCAGT 138741 Query 33500 CGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 | |||||||| || ||||| |||| ||||| || ||||| || || Sbjct 138740 CAGCCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTGAACAG 138695 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || |||| ||| ||||| || || ||||| || || ||||||||||| || ||||| | | Sbjct 137855 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 137796 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 ||||| ||| ||| || |||||||| |||||||| Sbjct 137795 CAGATATCAGGATACTGTATTGGGAATATAACAAA 137761 >seq401 Length=172835 Score = 82.4 bits (90), Expect = 1e-10 Identities = 241/369 (65%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 156558 ATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTTTA 156615 |||||||| |||| || ||||| || ||| | || | || || | | ||| | | Sbjct 20940 ATGACTCCGGTATTA--CCTATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGGCAATGA 20883 Query 156616 AAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTC 156675 | |||| ||| ||||||||| | || | ||||| || |||||||||||||| || | Sbjct 20882 AGAAATGTCCTAACGGAATGTTTTCAGAGATAAAATATGACGGTGAAAGAGTACAGGTGC 20823 Query 156676 ATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATA 156735 ||||||| || |||||| | || ||| | ||||| || | | |||| Sbjct 20822 ATAAAAAAGGGAATGAGTTTAAATATTTCTCGAGAGCATTAAAACCTGTTATGGCACATA 20763 Query 156736 AAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTAT 156795 |||| | || | ||||| || ||||| ||||||| ||| | || | | | Sbjct 20762 AAGTCAGTCATTTTAAAGATTATTTACCGCAAGCATTCCCAAAGGGGACCGATTTGATTC 20703 Query 156796 TGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTA---CCGCTCCCGTTTGGAAGTT 156852 | ||| ||||| || | | ||||| | ||| | | || | || ||||| | Sbjct 20702 TTGATGCTGAAGTTTTGATGGTAGATGTGAATACAGGAAAGCCTTTGCCATTTGGTACAC 20643 Query 156853 TAGGAATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACT 156912 |||| || || ||| || |||| ||| || | | ||||| |||| |||||||||| Sbjct 20642 TAGGTATCCATAAACAGTCTGAATTCAAAGACGCACAAGTGTGTCTGTTTGTGTTTGACT 20583 Query 156913 GTTTGTACT 156921 |||| |||| Sbjct 20582 GTTTATACT 20574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622939436520520