Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq434 221 1e-52 seq278 159 3e-34 >seq434 Length=190249 Score = 221 bits (244), Expect = 1e-52 Identities = 583/880 (66%), Gaps = 19/880 (2%) Strand=Plus/Minus Query 32177 GCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTGCCGTTG 32236 || || || || ||||||||||| ||| | || ||||| | ||| || || | Sbjct 114813 GCTTACTTCGTCGAATGGGGCGTCTACCCCAGGAAGTTCCCCGTCGACCGCGTACCCATC 114754 Query 32237 CCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGACTAAAC 32296 || ||| | | ||||| ||||||| || || || || ||||| || || || | ||| Sbjct 114753 CCGAATCTTACCCATCTTCTGTACGGTTTCATCCCAATCTGCGGTGGAGATGGCATCAAC 114694 Query 32297 GATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGCAAAGGCC 32354 || | ||| || | || |||||||| | || |||||||| || |||| ||| Sbjct 114693 GACAGTTTGAAA--GAAATCGAAGGCAGTTTCCAAGCTCTGCAACGATCCTGCAGCGGCA 114636 Query 32355 GCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGCAGAAGG 32414 | | |||||| || || | || |||||||||||||| || | || ||||| || |||| Sbjct 114635 GGGAAGACTTCAAAGTATCGATCCACGACCCTTGGGCAGCTCTTCAGAAACCACAAAAGG 114576 Query 32415 GCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGGCCAAGT 32474 | || | | ||||| ||||||||||| || ||||| ||||| ||||| | || Sbjct 114575 GTTTGGCGTCCTGGAATGAACCCTACAAGGGTAACTTCGGCCAGCTGATGATGTTGAAAC 114516 Query 32475 TGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGGATCCCT 32534 ||||| ||| || | || || ||||| || |||| || ||||| ||| | ||||| | Sbjct 114515 AGGCAAGACCTGACCTGAAGATCTTACCTTCCGTTGGTGGCTGGACCTTGGCTGATCCAT 114456 Query 32535 TTTATTTTATGCAC-GACGCGGAAAAACGGCACGTGTTTGTCGATTCCGTCAAAGAGTTT 32593 | | | || | ||| ||| || || || | || ||||| || || || || || Sbjct 114455 TCT-TCTTCTTCACTGACAAGGTTAAGAGGAAGCGCTTCGTCGACTCTGTTAAGGACTTC 114397 Query 32594 TTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGGCGGCAAA 32653 | | ||||||||||| |||||||||||||| || ||||||||||| || || || Sbjct 114396 CTTGAAACCTGGAAATTCTTCGACGGAGTGGACATCGACTGGGAGTTCCCTGGTGGTAAG 114337 Query 32654 GGTGCCAACCCGGCGCTCGGTAACGGGGAGCGCGACGCGCACACGTACATTATTTTGTTA 32713 || || ||||| | ||||||| | || ||||| |||| ||| | || | Sbjct 114336 GGCGCTAACCCTGATCTCGGTAGCCCTGA---CGACGGTCACATCTACGTCGAGCTGATG 114280 Query 32714 CAAGAATTGCGTTCTATGCTGGACGACCT-TCAATTGCAA-ACGGGCAAAACGTACGAGT 32771 | ||| || | ||||| |||| || || | ||| || ||||| | ||||| Sbjct 114279 AAGGAACTGAGAGAGATGCTCAACGAGCTGTC--TGCCAAGACAGGCAAGAAATACGAAC 114222 Query 32772 TGACTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATATGAAGCCGCGC 32831 ||||| || || || | || ||||| ||| ||||| | || | || || | Sbjct 114221 TGACTTCAGCCATCAGCTCTGGTTGGGACAAGATTCAGGTGGTAGACTACAAGGCGGCTC 114162 Query 32832 AAAAGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCATGGTCTAACA 32891 || ||||| | ||| | || || | ||||| || ||||| || || || ||||| ||| Sbjct 114161 AACAGTACATGGATCACATCTTCTTGATGAGCTATGACTTCAAGGGAGCTTGGTCAAACG 114102 Query 32892 CCGATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGATGAATTGTACA 32951 | | | ||| | || | || || ||||||| ||||| ||| | || |||| Sbjct 114101 ACACTCTTGGCCACCAAGCTGCTCTGCACGCTCCCGCATGGAACCCCAAGGAGACTTACA 114042 Query 32952 CCACAGATCACGCTGTTAAAT---TGTTAACAAGTCAAGGTGTAGCTTCTTACAAAATCA 33008 | || || || ||| |||| |||| | ||| || || | || | || ||| Sbjct 114041 CAACTGACTTCGGTGTCAAATTCCTGTTGGC---TCAGGGAGTCAGTCCTAAGAAGATCG 113985 Query 33009 TTGTCGGCATCGCCATGTACGGTCGCGGGTGGACGGGCGT 33048 | || || | || |||||||| || || ||||| || || Sbjct 113984 TCGTTGGTGTTGCTATGTACGGCCGTGGTTGGACTGGAGT 113945 >seq278 Length=307000 Score = 159 bits (176), Expect = 3e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 109246 GAAGTTGCACGTTTGCGCACTTTTGCAGAATGGCCTCGTGGTTTGAAACAGCAACCCGAT 109305 |||| ||| |||||||||| |||| ||| ||||| || | || || |||| || Sbjct 239043 GAAGCTGCGCGTTTGCGCAGTTTTAAAGACTGGCCGCGATGCATGCGGCAAAAACCAGAG 238984 Query 109306 AAACTAGCCGAGGCCGGGTTTTATTACACGGGCCAGGGCGATAAAACCAAATGTTTTTAT 109365 |||| ||||| || || || | ||||| || ||||| ||||| ||||| ||||| ||| Sbjct 238983 GAACTTGCCGAAGCTGGTTTCTTCTACACCGGTCAGGGGGATAAGACCAAGTGTTTCTAT 238924 Query 109366 TGTGACGGCGGTTTGAAAGACTGGGAGGCGGACGATGAGCCGTGGAAACTGCACGCGCGT 109425 || || |||||||||||||||||||| || || | ||| ||| ||| ||||||||| Sbjct 238923 TGCGATGGCGGTTTGAAAGACTGGGAAAATGATGACGTGCCCTGGGAACAGCACGCGCGC 238864 Query 109426 TGGTTTGACCGTTGCCCTTACGTGTTGCTTGTTAAGGGTCGAGATTATGTGCAAAA 109481 ||||| ||||| ||| | |||||| ||| || ||||| || || || || || || Sbjct 238863 TGGTTCGACCGCTGCGCCTACGTGCAGCTGGTGAAGGGCCGCGAGTACGTACAGAA 238808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425338831671640