Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq434 210 2e-49 seq33 107 2e-18 seq12 86.0 5e-12 >seq434 Length=190249 Score = 210 bits (232), Expect = 2e-49 Identities = 771/1190 (65%), Gaps = 27/1190 (2%) Strand=Plus/Plus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 |||||||||||||| || | ||| |||||||| || ||||||||||| || || | |||| Sbjct 113636 ATATTCATGGCATTTAGTATATCACCATTGTCTGCATCTATTTCCCATGCGAATAGACCT 113695 Query 95889 CCTAACTTGTTTTGTTCCACATATC-GACCTTTAGCTATAACAGAATCAACACTATCATA 95947 |||| ||| || | ||||||| | ||||| | || || | |||||| Sbjct 113696 CCTAGCTTATTATTCCTCACATATTTGGCCTTTT-CAATTGTCGATCTGGCGTCATCATA 113754 Query 95948 TGAAATTAAATCGCCTTTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCAAA 96007 || ||||| || || | || ||| ||||| | |||| || || |||||| | Sbjct 113755 TGTAATTAGGTCACCAGTCTCCTTCCTAAATACGTAAGGTGCTTGAGCCACTTTGTCATA 113814 Query 96008 TT-----TAACAATATATTTGTTTATT-TCGTTTTTGATTTGGCGATAATCAACAACGCC 96061 | | || | ||| | | || || || | | || || || || || Sbjct 113815 ATGGTACTCCCACTTGCCTTGAGCAATCTCATTGGCTATCTCTCTGTAGTCCACTACACC 113874 Query 96062 ATCTTCCCAAGTGCCCGAAAC-GGGCCCGTTACTACTTCCCAAAAAATAG-TTATCGTTT 96119 ||| | ||| || ||| || ||||| || |||| ||| ||| | ||| ||| | Sbjct 113875 ATCCTGCCAGGTACCCTTGACTGGGCCAGTAGCTACA--CCAGTGAATGGATTACCGTCT 113932 Query 96120 TCGTAAT--TTGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTT 96177 | |||| ||||| ||||||||| || || |||||||| || || || || | || | Sbjct 113933 TTGTAACCGTTGAC--TCCAGTCCAACCACGGCCGTACATAGCAACACCAACGACGATCT 113990 Query 96178 TGCGCGGGTCCACGCCTTGATTTGTGAGCAATTTAACGGCATGGTCCGTGTTGTACAGCT 96237 | || || || ||| || ||||| || | ||| || |||| || Sbjct 113991 TCTTAGGACTGACTCCCTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCT 114050 Query 96238 CGTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGACC 96297 | || |||||||| || |||| ||| | || ||||| || | | |||||||| Sbjct 114051 CCTTGGGGTTCCATGCGGGAGCGTGCAGAGCAGCTTGGTGGCCAAGAGTGTCGTTTGACC 114110 Query 96298 ACGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGT 96357 | || || || || || |||||||| | || || | || | | ||| ||| || | | Sbjct 114111 AAGCTCCCTTGAAGTCATAGCTCATCAAGAAGATGTGATCCATGTACTGTTGAGCCGCCT 114170 Query 96358 CGTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACG 96417 ||| | ||| || ||| ||||| || | ||||| || |||| ||||| Sbjct 114171 TGTAGTCTACCACCTGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTTCGTATT 114230 Query 96418 TTTTGCCCGTTT--GCAGTTGCAACTCGTCTAACATCACGCGCAATTCCTTTAATAGAAT 96475 | ||||| || | |||| || ||||| | |||| | | || |||||| | || Sbjct 114231 TCTTGCCTGTCTTGGCAGA--CAGCTCGTTGAGCATCTCTCTCAGTTCCTTCATCAGCTC 114288 Query 96476 GTTGTACGTGTCAGCGTCGCGCTCTTTGTTGCCGAGCGTCGGGTTGGCGCCTTTACCGCC 96535 | ||| ||| | ||||| || | | ||||| ||||| ||||| ||||| || Sbjct 114289 GACGTAGATGTGACCGTCG---TCAGGGCTACCGAGATCAGGGTTAGCGCCCTTACCACC 114345 Query 96536 CGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTCT 96595 || || |||||||||||||||||||||||||| |||||||| | | || || | Sbjct 114346 AGGGAACTCCCAGTCGATGTCCACTCCGTCGAAGAATTTCCAGGTTTCAAGGAAGTCCTT 114405 Query 96596 GACGGAGTCTACAAACACGC-GCCGTTTTTCCGCGTC-GTGCATGTAATAGAACGGGTCG 96653 || ||||| || || ||| || || || ||| ||| | | | |||| || || Sbjct 114406 AACAGAGTCGACGAA-GCGCTTCCTCTTAACCTTGTCAGTG-AAGAAGAAGAATGGATCA 114463 Query 96654 GACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGGCC 96713 | || |||||||| || | || || | || || |||| || | ||| |||| | Sbjct 114464 GCCAAGGTCCAGCCACCAACGGAAGGTAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAAC 114523 Query 96714 GCCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTTGC 96773 ||||| ||| || ||||| || |||||||| || ||||| | | || |||||||| Sbjct 114524 ATCATCAGCTGGCCGAAGTTACCCTTGTAGGGTTCATTCCAGGACGCCAAACCCTTTTGT 114583 Query 96774 GGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCTGG 96833 ||||| || | || |||||||||||||| || | ||||| || ||| | ||| | Sbjct 114584 GGTTTCTGAAGAGCTGCCCAAGGGTCGTGGATCGATACTTTGAAGTCTTCCCTGCCGCTG 114643 Query 96834 CAAGAGCGTTGCAGCGCTTCAAAACTACCGGGTATGGTTTTAAGGGCATCGTTAAGGCCG 96893 || || |||||||| |||| ||||| || || ||| | ||||| | ||| Sbjct 114644 CAGGATCGTTGCAGAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCCA 114703 Query 96894 TCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCACT 96953 || || || || || || || || ||||||| | ||| | | || || | || || Sbjct 114704 TCTCCACCGCAGATTGGGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTACG 114763 Query 96954 TTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGC 97003 ||| || || || || | || ||||||||||| || || || || Sbjct 114764 CGGTCGACGGGGAACTTCCTGGGGTAGACGCCCCATTCGACGAAGTAAGC 114813 >seq33 Length=1899332 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| ||||| || |||| || || ||||| |||||||| ||||| ||||| | Sbjct 110890 CCTCCTCTCAGCCTGAGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGAA 110831 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| ||||| || || | ||||| || || ||||| || Sbjct 110830 AGAGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGG 110771 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || ||||| |||||| | | | |||||| | |||| Sbjct 110770 ATGCCCTCTTTGTCCTGGATTTTTGC--CTTCACATTCTCAATAGTGTCTGAAGCCTCCA 110713 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||| || || ||||| ||||| || || ||||||||| Sbjct 110712 CCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATCTGCATT 110663 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| ||||| || || | || || ||||| ||||| || ||||||||||| | Sbjct 99897 CCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGAG 99956 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| ||||| || || | ||||| || || ||||| || Sbjct 99957 AGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAATATAAGACGTTGCTGGTCTGGCGGG 100016 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || ||||| |||||| | | | |||||| | |||| Sbjct 100017 ATGCCCTCTTTGTCCTGAATCTTTGC--CTTCACATTCTCAATAGTGTCTGAAGCCTCCA 100074 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||| || || ||||| ||||| || || || |||||| Sbjct 100075 CCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCATT 100124 >seq12 Length=2918994 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | || ||||| || || ||||| ||||||||||| | | Sbjct 2423288 CCACCACGGAGACGCAGAACAAGGTGGAGCGTAGATTCTTTTTGGATGTTGTAGTCAGAC 2423229 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||| || || || || || || | || || ||||| || || || Sbjct 2423228 AGTGTGCGACCGTCTTCTAACTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGGGGA 2423169 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| ||||| ||| || || | | | ||||||| ||||| Sbjct 2423168 ATGCCTTCTTTGTCTTGAATTTTGGCT--TTTACATTTTCAATAGTGTCGGATGGCTCAA 2423111 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||| | ||||| ||||| || |||| ||||| ||||||||||||||| || Sbjct 2423110 CTTCAAGAGTGATAGTTTTACCCGTCAAGGTTTTCACAAAAATCTGCATTATG 2423058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405083077801030