Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq33 572 2e-158 seq416 105 8e-18 >seq33 Length=1899332 Score = 572 bits (634), Expect = 2e-158 Identities = 1202/1764 (68%), Gaps = 56/1764 (3%) Strand=Plus/Minus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || || ||||| |||| |||||||||||||||||||| || | |||| | || ||| Sbjct 686913 GCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAA 686854 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 || ||| || | ||| |||| | || || || | ||| ||||| | ||||| || Sbjct 686853 TGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTC 686794 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| || || || || ||||| |||||||||| ||| | || ||| | | |||| Sbjct 686793 TGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCC 686734 Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGA 62106 || | ||||||||| || || |||| |||||| |||| | || |||| ||||| || Sbjct 686733 CAGACAGTTTTATATAAGTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAATAGA 686675 Query 62107 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62166 |||| || || || ||| || || || |||| |||||| | || ||||| Sbjct 686674 TCCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAA 686615 Query 62167 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC---TCCGAGT 62223 | ||| | | ||| ||||||| ||||| ||||| || ||||| |||| || || Sbjct 686614 ATCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTCTGA-- 686557 Query 62224 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62283 ||||| || ||| | ||||| | || |||||||||||||| ||||||||||| || Sbjct 686556 -TAAATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGA 686498 Query 62284 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTA 62341 |||||| ||||| || || | |||| |||||||||||| ||||| | ||||| Sbjct 686497 TGCAGTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACC--ATGTTTGGCAATTTTT 686440 Query 62342 TCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 62401 ||||| || | |||||||||| | || | || ||| Sbjct 686439 TCTTTGAGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGC 686380 Query 62402 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGC 62460 | ||||| | |||||| | || | ||| |||| || || || || | ||||||||| Sbjct 686379 AATATACCTTGACTGGCAGGAC-AGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGC 686321 Query 62461 TAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 62520 || |||||||| || |||| ||| || |||||||| ||||| || || | | ||||| Sbjct 686320 TAACTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAA 686261 Query 62521 ATCTTGCGCTTCCAGGCTATC-AAATGGATA--ATTTAAGAGAATAAACGCGTCTGCTAA 62577 | ||| || || || || | ||| |||| || ||| || || ||||| Sbjct 686260 TTTAATTGCTGCCTCACTTTCGTAAGGTATACGCATTAA---AACAAATGCATCAGCTAA 686204 Query 62578 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62637 |||||| || ||||| ||||| |||| || ||| |||| ||| ||| || ||||| | Sbjct 686203 TCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCAC 686144 Query 62638 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACT-TTGACCACAT 62696 ||||||||||| | ||| ||||||||||| ||| |||||| || | || || | Sbjct 686143 TGGATAATAATTTACATCAATAATTTTATTTAGA-TTCTGAGTTATAGTCTTAGTAACTT 686085 Query 62697 CCTTCAGTTTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAATGCAACA 62752 |||| | |||| |||| | | | | || || | |||||||| || || |||| Sbjct 686084 CCTTTAATTTGGTGAAATTATATGTTTTGTCC-TCATTCACAAACATATTTAAAGCAATT 686026 Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 ||||| ||||| || || || || |||| | | |||| || || |||||||| Sbjct 686025 GATGCTAGATTGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCAC 685966 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 | || || || || || || || || || | ||| || || ||| | || || | ||| Sbjct 685965 AAGTTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCT 685906 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932 |||||||| ||| ||||||| || ||||||| || | ||| ||||| |||||||| | Sbjct 685905 TTATAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGA 685846 Query 62933 ACTCGAGC-----CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACA 62987 ||| |||| ||| || || | ||||| |||| ||| ||||| Sbjct 685845 ACTTGAGCTCTCACTTGTTTCACGAAGCGACCCTCTT-----TTTCATATTTCTCATACA 685791 Query 62988 ATCGTTCGAACTCGTCTCCCCAAACATTGT-CCAGTCCAGGACATTCATCCGGACACATC 63046 | ||| || || || |||| |||| | | | |||||||||||||||| || ||||| Sbjct 685790 AAGCTTCAAATTCCTCACCCC-AACAGTCTGCTAGTCCAGGACATTCATGGGGGCACATG 685732 Query 63047 AACGACCACTCTCCGTCAT--CCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63103 | ||| ||| | || | ||| |||| |||||| || | ||||| ||||| | | Sbjct 685731 ATACTCCAATCT---TGATTGCTTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAA 685675 Query 63104 GCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 || ||| ||||| ||||||| | ||| || || || || |||||||| | ||| || Sbjct 685674 GC-ATAGAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAG 685616 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 ||| | | ||||||| |||||| ||||| ||||||||||| | | || || | ||| Sbjct 685615 GAATTCAAATATATCAGCATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTT 685556 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 || ||||| || |||| |||| ||| ||||| || || ||||| ||||| || | | Sbjct 685555 ATTACCTCCTTGGTCTACATATCGAGCAGTGTTGTTGTACACTCTTAACATGGGTACTAG 685496 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTA 63340 |||||| || |||||| || || | ||||| |||| | || | ||| | | || Sbjct 685495 ACCATTAGAGACACCATTTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGT-GTA 685437 Query 63341 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 63400 ||| |||||||| || || || ||||| || | || ||| |||||||||| ||| Sbjct 685436 CATGA-AGACCTATCCCACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCA 685378 Query 63401 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63460 || || ||||| || ||||||||| |||| | ||||| || ||| | ||| | Sbjct 685377 TAAATTCCCTCAATGCTATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGT 685318 Query 63461 CGACTAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAG 63519 || |||| | || | | | ||| || ||| || || ||||| ||||||| || || Sbjct 685317 CGTGGAGTTGCTGC-TGAGAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAG 685259 Query 63520 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63579 |||||||| || | ||||| || || || ||| ||||||| | || || Sbjct 685258 AAGATTGTAGGTGTTTATAGCCCCCTCAATGTCTTCGCCATGTATTCCTATAGAAACTCG 685199 Query 63580 CATTAACATGTGCTGAGGTCTTTC 63603 ||| | ||| ||||| || ||||| Sbjct 685198 CATGAGCATATGCTGTGGCCTTTC 685175 >seq416 Length=155529 Score = 105 bits (116), Expect = 8e-18 Identities = 159/226 (70%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||| ||| | || ||| || || | ||| ||||| | || ||||| | Sbjct 138917 CCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCGCGCTTCT 138858 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | |||||| || || ||||| ||||| ||||| || ||||| ||||| ||||||| Sbjct 138857 TCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACTGCAGCAAAGG 138798 Query 32803 CAATAAGTCTCTCTCCATAACCGGC------GCTGTCATGTATCCACTTTTGAGCCCAAT 32856 |||| | | ||| || | ||| |||| || |||||||| | ||||| | Sbjct 138797 CAATGATACGCTCAGCAAATGTGGCTGACTTGCTGGCA---ATCCACTTCAGGGCCCAGT 138741 Query 32857 CGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 | |||||||| || ||||| |||| || || |||||||| || || Sbjct 138740 CAGCCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTGAACAG 138695 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 32922 TCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGG 32979 ||| ||| ||||| ||||| | ||||| || ||| || || |||| || || || | Sbjct 138482 TCTCTAATGTATGTGTCAATGAGCAAAGAGTA--CATCTCAGAGTGAACATTCTCCATAG 138425 Query 32980 CCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 33039 | || || ||||| ||||||||||| || || || | || || ||| | | || |||| Sbjct 138424 CAATCTGGAATCCATAGAAGCATCTGGCTTCAGTCACTTGCACCTCTTGAGAGAAGCGTT 138365 Query 33040 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33099 | |||| || ||||| || || || ||| || ||||| || |||| |||||||| | Sbjct 138364 CCACTAAGTTCTCATTAACAATGCCATCAGACGCAGCAAAGAAAGCCAGCACATGTTTGA 138305 Query 33100 TAAA 33103 | || Sbjct 138304 TGAA 138301 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || |||| ||| ||||| || || ||||| || || ||||||||||| || ||||| | | Sbjct 137855 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 137796 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 ||||| ||| |||| || ||||| || |||||||| Sbjct 137795 CAGATATCAGGATACTGTATTGGGAATATAACAAA 137761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624103361200