Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq434 316 2e-81 seq278 86.0 7e-12 >seq434 Length=190249 Score = 316 bits (350), Expect = 2e-81 Identities = 601/874 (69%), Gaps = 23/874 (3%) Strand=Plus/Plus Query 51575 CCAGCCGCGAGCGTACATCGCCACGCCGACGACGATCTTCTGATTGCGCACGCCCTGTTC 51634 ||| || || ||||||| || || || ||||||||||||| | | || ||||| | Sbjct 113953 CCAACCACGGCCGTACATAGCAACACCAACGACGATCTTCTTAGGACTGACTCCCTGAGC 114012 Query 51635 GAGAAGCGAC--GACACGGCATAGTCGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGC 51692 | || | ||||| | | ||| || ||||| | || | |||||||||| ||| Sbjct 114013 CAACAGGAATTTGACACCGAA--GTCAGTTGTGTAAGTCTCCTTGGGGTTCCATGCGGGA 114070 Query 51693 GCGAACAGTGTGGTCTGGTAGCCCAGATCGGTGTTGGACCACGCACCCTTGAAATCGTAG 51752 ||| ||| | | |||| ||| ||| | ||| ||||| || |||||||| || ||| Sbjct 114071 GCGTGCAGAGCAGCTTGGTGGCCAAGAGTGTCGTTTGACCAAGCTCCCTTGAAGTCATAG 114130 Query 51753 TTCATGAGGAAAATGTAATCCAACTGCGTCTGCGCCCGAGCGTAGTCGACGACTTGAATT 51812 |||| | ||| |||| ||||| | | || ||| |||||| || || ||||| Sbjct 114131 CTCATCAAGAAGATGTGATCCATGTACTGTTGAGCCGCCTTGTAGTCTACCACCTGAATC 114190 Query 51813 TTATCGTAGCCCGCGCTGATGGCGCTGGTCAACAGGTACGAACGGTTCGTGGC------G 51866 || || | || | ||||||||| |||| || || | ||| || | | Sbjct 114191 TTGTCCCAACCAGAGCTGATGGCTGAAGTCA----GTTCGTAT--TTCTTGCCTGTCTTG 114244 Query 51867 GCGCTCAACTCGTCGAGCATGTCGCGCAGCTCGGTCAAAAGCGTCACGTACGTCGCACCA 51926 || || ||||| |||||| || | ||| || ||| ||| ||||| | ||| Sbjct 114245 GCAGACAGCTCGTTGAGCATCTCTCTCAGTTCCTTCATCAGCTCGACGTAGATGTGACCG 114304 Query 51927 TCGCGATCGGGATCGCCCAGGTCGGGATTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCG 51986 ||| | ||| | || || || || || ||||| || || || || |||||||||||| Sbjct 114305 TCGTCA--GGGCTA-CCGAGATCAGGGTTAGCGCCCTTACCACCAGGGAACTCCCAGTCG 114361 Query 51987 ACGTCGACTCCGTCGAAGAACTTCCAAGTCAGCAGAAACTCGCGAACCGATTCGACGAAG 52046 | ||| |||||||||||||| ||||| || || || || ||| || ||||||||| Sbjct 114362 ATGTCCACTCCGTCGAAGAATTTCCAGGTTTCAAGGAAGTCCTTAACAGAGTCGACGAAG 114421 Query 52047 -GTTGCGCGTTTGCTCGCGTC-GTGCAGGAAGAAGAACGGATCGGACAGCGTCCAACCGC 52104 | | | || | | ||| ||| || |||||||| ||||| | || ||||| || | Sbjct 114422 CGCTTCCTCTTAAC-CTTGTCAGTGAAG-AAGAAGAATGGATCAGCCAAGGTCCAGCCAC 114479 Query 52105 CGATCGAGGGCAGAATCTTGAGCGAAGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAA 52164 | | || || | ||||| || ||| | ||| |||| | ||||||||| || | Sbjct 114480 CAACGGAAGGTAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAACATCATCAGCTGGCCGA 114539 Query 52165 AGTTTCCCTTGTACGGATCGTTCCAGGCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCCG 52224 |||| |||||||| || || ||||||| || | || || || |||||||| || || | Sbjct 114540 AGTTACCCTTGTAGGGTTCATTCCAGGACGCCAAACCCTTTTGTGGTTTCTGAAGAGCTG 114599 Query 52225 CCCAGGGATCGTGAATCGTCACCTTAAAGTCCGACCTGCCCACGCACGACCGTTGCAACG 52284 |||| || ||||| |||| || || ||||| |||||| ||| || ||||||| | Sbjct 114600 CCCAAGGGTCGTGGATCGATACTTTGAAGTCTTCCCTGCCGCTGCAGGATCGTTGCAGAG 114659 Query 52285 CTTCGAAACTGTTGTCGATCGGTTTCAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGG 52344 ||| ||||||| ||||| ||||| |||||||||||||| || || ||||| || | Sbjct 114660 CTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCCATCTCCACCGCAGATTG 114719 Query 52345 GAATGAAGCCGTACAGCAGATGCGACAGGTTCGGCAACGGCACCAGATCTACGGGAAAGT 52404 | ||||| |||||||| ||||| | || ||||| | || || | || ||||| || | Sbjct 114720 GGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTACGCGGTCGACGGGGAACT 114779 Query 52405 TGCGCAAGTAAACGCCCCATTCGACAAAGTAGGC 52438 | | ||| |||||||||||||| ||||| || Sbjct 114780 TCCTGGGGTAGACGCCCCATTCGACGAAGTAAGC 114813 >seq278 Length=307000 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 38481 GCCGAGGCCGGCTTCTACTATTCGGGCACCGGAGACCAGGTCAAATGTTTCTTTTGCGGC 38540 ||||| || || |||| ||| | || || || || ||| ||||||| ||||| Sbjct 238977 GCCGAAGCTGGTTTCTTCTACACCGGTCAGGGGGATAAGACCAAGTGTTTCTATTGCGAT 238918 Query 38541 GGCGGCCTTAAGGACTGGGAGCCTGCGGACGATCCGTGGGCGCAGCACGCGCGCTGGTTC 38600 ||||| | || |||||||| || |||| || |||| |||||||||||||||||| Sbjct 238917 GGCGGTTTGAAAGACTGGGAAAATGATGACGTGCCCTGGGAACAGCACGCGCGCTGGTTC 238858 Query 38601 GACAGGTGCGCTTACGTGCTCACCGTCAAAGGCGCCGACTACGTTCA 38647 ||| | ||||| ||||||| || || ||| ||| ||||| || Sbjct 238857 GACCGCTGCGCCTACGTGCAGCTGGTGAAGGGCCGCGAGTACGTACA 238811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537596500120120