Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq12 111 1e-19 seq278 91.5 1e-13 >seq12 Length=2918994 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || |||||||| |||||||||| || || ||| | ||| |||||| | Sbjct 2850427 ATGCAAATCTTCGTCAAAACCTTGACCGGCAAGACTATCACCCTAGAAGTTGAACCCTCC 2850368 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | || ||| ||||| ||||| ||||| |||| ||||| Sbjct 2850367 GACACTATTGAAAATGTTAAAGCCAAAATCCAGGACAAGGAAGGTATTCCACCAGATCAG 2850308 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 || | | || | || |||||||| ||||||| || | ||| | ||||||| | Sbjct 2850307 CAGCGATTGATCTTCGCCGGCAAACAGCTGGAAGACGGTCGCACACTTT--CCGATTACA 2850250 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| ||||| ||||| || ||||| ||||| | |||||||||||||| Sbjct 2850249 ATATTCAAAAGGAATCCACTCTACACTTAGTACTTCGTCTGCGCGGTGG 2850201 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || ||||| || ||||| || || |||| || |||||||| || | || ||||||| Sbjct 2853152 AACATGCAGATCTTTGTGAAGACTTTGACGGGGAAAACCATAACATTAGAGGTGGAACCC 2853093 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| | ||| | || ||| ||||||| || || |||||| |||| |||| Sbjct 2853092 TCTGATACCATTGAAAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCTCCCGAT 2853033 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 ||||| || | || | || || ||||||||||||||| ||| | |||| || Sbjct 2853032 CAACAGAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGACGCACTCTTTCCGACTAC 2852973 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| || || || ||||| || ||| | ||| ||||||| | ||||| Sbjct 2852972 AATATCCAGAAGGAGTCTACTCTTCATCTCGTGCTGCGTCTCAGAGGTGG 2852923 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| |||||||| ||||| |||| || ||||| || || | ||| || || Sbjct 2423061 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACTCTTGAAGTTGAGCCATC 2423120 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| || ||| | |||||| |||||| |||||||||||| ||||| ||||| Sbjct 2423121 CGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCA 2423180 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || | || || | || || || || || ||||| | || || | || || || Sbjct 2423181 GCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACAA 2423240 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||||||||| || || | || ||||||| || ||||| Sbjct 2423241 CATCCAAAAAGAATCTACGCTCCACCTTGTTCTGCGTCTCCGTGGTGG 2423288 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | || || ||||||||||| | ||| |||||| Sbjct 2849971 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 2849912 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| || || || || |||| |||||| Sbjct 2849911 GACACAATTGAAAACGTGAAAGCCAAAATTCAAGATAAGGAGGGAATTCCACCAGATCAA 2849852 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | |||| || ||||| || | ||||| ||| | ||||||| ||| Sbjct 2849851 CAAAGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGCACTCTTTCCGATTACAAT 2849792 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || ||||| ||||| ||||| |||||||| Sbjct 2849791 ATTCAAAAGGAATCAACACTTCATTTAGT 2849763 >seq278 Length=307000 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 105162 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 105221 || || || || ||| | || |||| || ||||| ||||| || ||||||||||| ||| Sbjct 239304 AATGGATTTTATTATCTTGGCCGCGGAGATGAAGTACGCTGTGCATTCTGCAAAGTTGAA 239245 Query 105222 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 105281 || ||| | ||| | || ||||| || |||||| || ||| | || ||||||||||| Sbjct 239244 ATTATGAGATGGGTCGAAGGCGATGATCCGGCCAAGGACCATCAGCGTTGGGCGCCACAA 239185 Query 105282 TGCCCGTT 105289 ||||| || Sbjct 239184 TGCCCATT 239177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423034859667400