Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq83 100 7e-18 >seq83 Length=1090723 Score = 100 bits (110), Expect = 7e-18 Identities = 244/365 (67%), Gaps = 11/365 (3%) Strand=Plus/Minus Query 3167 CGCAAAACTCTTACGCCTACAAATACTTTGGCTGCGAGCTGCTAAACTTTGTCAACGTTG 3226 ||||||||| |||||| | | | ||| ||| || || | ||||| ||||||| | Sbjct 321587 CGCAAAACTTTTACGCGTTCCGTTTCTTCATCTGTGAAGTGTTGAACTTCATCAACGTGG 321528 Query 3227 TCGCACAGATATGCTTCATGAATGCCTTTATAGGCGAAGACTTTTTGTTGTACGGAATCT 3286 ||| ||||| | ||||||| | ||| | | || ||| || | |||||| | Sbjct 321527 TCGGCCAGATCTTCTTCATGGACTTCTTCTTGGACGGAGAGTTCTCCACGTACGGCAGTG 321468 Query 3287 ATGTTACCTTCTTCAACCAG--GAAGCCGCCCATCCGAACATGACGAACCCCATGAAGCG 3344 | || | ||||| | || | ||||| || | || || ||| ||| | Sbjct 321467 ACGTGGTCAGCTTCACCGAGATGGAGCCGGAA----GAGCGTGTTGA-CCCGATGGCTAG 321413 Query 3345 AGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGA 3404 ||| ||||| | | | || ||||| || |||||||||||||| ||||| || || | Sbjct 321412 AGTGTTTCCTAAAGTGACCAAGTGTACCTTCCACAAATACGGTCCCTCGGGAACCGTGCA 321353 Query 3405 AAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTT 3464 || | ||| || || ||| | || || |||| | |||||||||||||||||| | || Sbjct 321352 GAAGTTCGACGGCCTGTGCGTGCTGCCCCTGAACATTGTCAACGAGAAGATCTACGTGTT 321293 Query 3465 CCTCTGGTTCTGGTTCTACGTGCTAGCCATCATCAGCGG--TATCGTTGTTCTGTACCGC 3522 | | |||||||||||| | || | ||| | || || | |||||| || |||||| Sbjct 321292 CTTGTGGTTCTGGTTCATGATCCTGTCTATCTTGAGTGGAATTTCGTTGATC--TACCGC 321235 Query 3523 ATTGC 3527 || || Sbjct 321234 ATGGC 321230 Score = 87.8 bits (96), Expect = 4e-14 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 2675 CCGTGAAGGGCTTAATAAAGCTTCCAACAGTCTCCATCGACAATGTATTCTTCCGGTTGC 2734 |||||||||| | | ||||| |||| | ||||||||| | |||||| | | Sbjct 322082 CCGTGAAGGGGCTTCTCAAGCTCGACTCAGTGTGCATCGACAACAATGTGTTCCGGCTTC 322023 Query 2735 ATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCATTGCTGGTGACTTCGCGGCAGT 2794 ||||| | ||||||||||||||| ||||||||||| |||| || || |||||||| | Sbjct 322022 ATTACAAAGCCACCGTGATCATCCTGATCGCGTTTTCGCTGCTCGTCACGTCGCGGCAAT 321963 Query 2795 ACTTCGGAAAGCTCATAGATTGC 2817 || |||| | | ||| || ||| Sbjct 321962 ACATCGGTGACCCCATCGACTGC 321940 Score = 86.0 bits (94), Expect = 2e-13 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 3410 ACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCT 3469 |||| | ||||||||||| ||| |||||||||||||||||||||||| | ||||| | Sbjct 430428 ACGACGCGCTCTGCATCCTGCCGCTCAACGTGGTCAACGAGAAGATCTACGTGTTCCTGT 430369 Query 3470 GGTTCTGGTTCTACGTGCTAGCCATCATCA 3499 ||||||||||| | | || | |||| ||| Sbjct 430368 GGTTCTGGTTCGTCATCCTCGGCATCCTCA 430339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479863909500