Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq33 95.1 1e-14 seq12 86.0 5e-12 seq6 86.0 5e-12 seq278 82.4 6e-11 >seq33 Length=1899332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||||| ||||| | || || ||| |||||||| |||||||| |||| Sbjct 99896 ACCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGA 99955 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || | || ||||| || || ||||| ||||| || || ||||| || ||| Sbjct 99956 GAGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAATATAAGACGTTGCTGGTCTGGCGG 100015 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TCAGTAGATTC 34076 | || |||||||||| ||| ||| ||| | | || || || || | || || Sbjct 100016 GATGCCCTCTTTGTCCTGAATCTTTGCCTTCA---CATTCTCAATAGTGTCTGAAGCCTC 100072 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 |||| || || || || || || || ||||| || |||||||||||| Sbjct 100073 CACCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCATT 100124 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||||| ||||||| ||||| ||| ||||| || ||||| || |||| Sbjct 110891 ACCTCCTCTCAGCCTGAGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGA 110832 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | || || | || ||||| || || ||||| || || || || ||||| || || Sbjct 110831 AAGAGTG-CGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCG 110773 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TCAGTAGATT 34075 | | || |||||||||| |||||| ||| | | || || || || | || | Sbjct 110772 GGATGCCCTCTTTGTCCTGGATTTTTGCCTTCA---CATTCTCAATAGTGTCTGAAGCCT 110716 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | |||| || || || || || || || ||||| || ||||| |||||| Sbjct 110715 CCACCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATCTGCATT 110663 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||| || ||| ||||||| || | ||| ||||||||||||||||| | || Sbjct 106125 CCTCCTGTCTGCCTGAGCACCAAGTGGAATGTGGATTCCTTCTGAATGTTGTAGTTTGTG 106184 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || | || ||||| || || ||||| ||||| || || ||||| || ||| Sbjct 106185 AGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAATATAAGACGTTGCTGGTCTGGCGGA 106244 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TCAGTAGATTCG 34077 | || |||||||||| ||| ||| ||| | | || || || || | || || Sbjct 106245 ATGCCCTCTTTGTCCTGAATCTTTGCCTTCA---CATTCTCAATAGTCTCTGAAGCCTCC 106301 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || || ||||| || ||||||||||| Sbjct 106302 ACCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCAT 106351 >seq12 Length=2918994 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| ||| ||||| ||||| ||||| ||| ||||| ||||||||||| || | Sbjct 2423517 ACCACCTCGCAGACGCAGGACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGA 2423458 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| | || |||| |||||||||||||| |||| | ||||| || || Sbjct 2423457 GAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCTGGTGG 2423398 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | |||||||| |||||| ||||| ||| | | |||| | || ||| Sbjct 2423397 GATACCTTCTTTGTCTTGAATTTTAGCCTTAA-CATTCTCGATAGTATCTGAAGGCTCGA 2423339 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| || ||||| || || || || ||||| || || || ||||| Sbjct 2423338 CTTCGAGGGTAATTGTCTTACCAGTAAGCGTTTTAACGAAAATCTGCAT 2423290 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || |||| ||||| ||| ||||||||||| |||||||| | ||| |||| Sbjct 2852248 AGACGAAGTACCAAGTGAAGAGTGGATTCCTTCTGAATATTGTAATCAGACAAGGTTCGC 2852307 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || ||||||||||||||||| || |||| |||||||| || Sbjct 2852308 CCATCTTCCAATTGCTTGCCGGCGAAGATCAATCGCTGCTGGTC 2852351 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| || |||||||| |||||||| || ||||||||| || ||||| || | Sbjct 2852922 ACCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGA 2852981 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | || || | || |||||||| || ||||| || |||| | ||| ||||| | Sbjct 2852982 AAGAGTG-CGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAG 2853040 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCG 34077 | | || || || || ||||||| |||| | | ||| |||||| | ||| Sbjct 2853041 GAATGCCTTCCTTATCTTGAATTTTT-GCTTTAACGTTTTCAATGGTATCAGAGGGTTCC 2853099 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || | ||||| ||||| || || | || ||||||||||| ||||| || Sbjct 2853100 ACCTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCATGTT 2853152 >seq6 Length=3068546 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/136 (76%), Gaps = 7/136 (5%) Strand=Plus/Plus Query 116175 TTTATTTATTTA-GGAACTTTTAACAATATGTTACGCCAGTTCCATTGTAACTTGCTGGA 116233 |||||||||||| ||||||||||||| |||||| ||||||||| ||||| | | Sbjct 2784003 TTTATTTATTTAAGGAACTTTTAACA--ATGTTATATCAGTTCCATCGTAACCTTATCCT 2784060 Query 116234 ATCACTTAAGACTTAATTACATAGTAACTAGTGAATAAACTAATTTAGCCTCTGTCGACA 116293 | || ||||| ||||||| ||||| | |||||| || || |||| || | |||| Sbjct 2784061 A-CA---AAGACACAATTACAACGTAACAAATGAATAGACAAACATAGCTTCAGGTGACA 2784116 Query 116294 TTGGTTTGCCTAAGAT 116309 |||||| ||| ||||| Sbjct 2784117 TTGGTTCGCCCAAGAT 2784132 >seq278 Length=307000 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10212 CACATAGGCGCAGCGACTAAACCAAAACGCGTGTTGTTCCCACGCCACATCGTCATCTTG 10271 ||| ||||||||||| ||||| |||||| |||||||| | ||| || |||| || Sbjct 238840 CACGTAGGCGCAGCGGTCGAACCAGCGCGCGTGCTGTTCCCAGGGCACGTCATCATTTTC 238899 Query 10272 CCAATGATTTAATCCGCCGTTGCAATGAAAACATTTAGTCTTATCACCCTCGCCCACATA 10331 ||| | || || ||||| | ||||| ||||| || |||||||| |||| || || Sbjct 238900 CCAGTCTTTCAAACCGCCATCGCAATAGAAACACTTGGTCTTATCCCCCTGACCGGTGTA 238959 Query 10332 ATAAAATCCCGCATCTGCTAGTTCCTCGGGCTT 10364 | || || || || || |||||||| || || Sbjct 238960 GAAGAAACCAGCTTCGGCAAGTTCCTCTGGTTT 238992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397057575319594