Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq12 159 8e-34 seq33 136 9e-27 seq2 95.1 3e-14 >seq12 Length=2918994 Score = 159 bits (176), Expect = 8e-34 Identities = 179/238 (75%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| |||||||||||| || ||||| | Sbjct 2423288 CCACCACGGAGACGCAGAACAAGGTGGAGCGTAGATTCTTTTTGGATGTTGTAGTCAGAC 2423229 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||||||||| || ||||| ||||||||||| ||||| ||| |||||| Sbjct 2423228 AGTGTGCGACCGTCTTCTAACTGCTTTCCAGCGAAGATCAGTCGCTGCTGA---TCTGGG 2423172 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || || ||||| ||||| || ||||| |||| ||| | || Sbjct 2423171 GGAATGCCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTGTCGGATGGCTCA 2423112 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481 ||||| || ||||| || || || |||| || || || || |||||||||||| ||| Sbjct 2423111 ACTTCAAGAGTGATAGTTTTACCCGTCAAGGTTTTCACAAAAATCTGCATTATGATAT 2423054 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | |||||| | || | ||| ||| ||||| ||||| || |||| Sbjct 2850201 CCACCGCGCAGACGAAGTACTAAGTGTAGAGTGGATTCCTTTTGAATATTGTAATCGGAA 2850260 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | ||||| || |||||||||| ||||| ||| ||| Sbjct 2850261 AGTGTGCGACCGTCTTCCAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGTGGA 2850320 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||||||||| ||||| || ||||| |||| ||| | ||| ||| Sbjct 2850321 ATACCTTCCTTGTCCTGGATTTTGGCTTTAACATTTTCAATAGTGTCGGAGGGTTCAACT 2850380 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||||| || |||||||| || ||||| Sbjct 2850381 TCTAGGGTGATAGTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 2850427 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || |||||||||| || || || |||||||| ||||||| Sbjct 2852923 CCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAA 2852982 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| ||||| ||||||||||| |||||||||| | ||||||| || Sbjct 2852983 AGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGA 2853042 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || ||||| ||||| |||||||| || | ||| | ||| || Sbjct 2853043 ATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCACC 2853102 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || ||||| |||| |||||| || || |||||||| Sbjct 2853103 TCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 2853149 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||||||||| || | || ||||| || || ||||| ||||| ||||||||| Sbjct 2852503 TCCTTCTGGATATTATAATCAGAAAGAGTGCGGCCATCCTCTAACTGTTTGCCTGCGAAG 2852562 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| ||||| || |||||| || ||||| |||||||| ||||| ||||| || Sbjct 2852563 ATCAGTCGCTGCTG---GTCTGGGGGAATACCTTCCTTATCCTGTATTTTGGCTTTGACA 2852619 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || || ||||| | || || || || || || | ||| || Sbjct 2852620 TTTTCAATTGTGTCAGACGGCTCAACTTCTAAAGTTATTGTTTTGCCAGTTAAAGTTTTT 2852679 Query 288460 ACGAATATCTGCATT 288474 |||||||| |||||| Sbjct 2852680 ACGAATATTTGCATT 2852694 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||||||||| ||||| | | |||||||| ||||| || ||||| || || || Sbjct 2852730 TTCTTTTTGGATATTGTAGTCTGATAATGTGCGTCCATCTTCCAACTGTTTGCCGGCAAA 2852789 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| || || ||| | |||||| || || |||||||||||||| ||||| || || Sbjct 2852790 GATCAATCGTTGCTGATCAGGTGGGATACCCTCCTTATCCTGGATTTTGGCTTTAACATT 2852849 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | || || || | ||||| || || || |||| || || || Sbjct 2852850 TTCGATTGTGTCAGAAGGCTCAACCTCTAAAGTGATGGTTTTGCCAGTCAATGTTTTTAC 2852909 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 2852910 GAAAATTTGCAT 2852921 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | || ||||| || ||||| || || || || |||||| Sbjct 2850465 TCCTTTTGGATGTTGTAGTCTGAAAGAGTGCGACCATCTTCCAACTGCTTACCAGCGAAG 2850524 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | |||||| | |||||| || || |||||||||||||| ||||| || ||| Sbjct 2850525 ATCAATCTCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGGATTTTGGCTTTAACATTT 2850584 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || || || ||||| ||||| || || || || || ||| Sbjct 2850585 TCGATCGTGTCAGATGGCTCGACCTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTCACG 2850644 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 2850645 AAAATTTGCAT 2850655 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| |||||||| | || || || |||||| Sbjct 2852047 TCCTTCTGGATGTTGTAGTCCGAAAGTGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAAG 2852106 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || |||||| ||||||||||| || |||||||| ||||| || Sbjct 2852107 ATCAATCGCTGCTGG---TCTGGGGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTAACA 2852163 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || | || || || || ||||| || || || |||| |||||| Sbjct 2852164 TTTTCGATTGTGTCTGAAGGCTCAACCTCTAGAGTGATGGTTTTGCCTGTCAAGGTCTTG 2852223 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 2852224 ACGAAGATTTGCAT 2852237 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || | || |||||||| ||||| | || || || || || Sbjct 2423709 TTCTTTTTGGATGTTGTAATCAGAAAGGGTGCGTCCATCTTCAAGCTGCTTGCCGGCAAA 2423650 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| |||||||| || |||||| ||||| || || |||||||| || || || || Sbjct 2423649 GATAAGACGCTGCTG---GTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTTAC 2423593 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || |||| || | || ||||| || ||||| || || || |||| ||||| Sbjct 2423592 ATTCTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTTTTTCCAGTCAATGTCTT 2423533 Query 288459 GACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 2423532 CACGAAAATCTGCAT 2423518 Score = 104 bits (114), Expect = 6e-17 Identities = 164/234 (70%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 ||||| |||||| | | || || || | ||||| || ||| ||||| ||||| || Sbjct 2849739 TACAT-TCCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTA 2849797 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 |||| || ||||| |||||||| | || || || ||||| |||| | |||||| Sbjct 2849798 ATCGGAAAGAGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCTTTGTTGATC 2849857 Query 288360 ATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 ||| ||||| || ||||| || ||||| |||||||||||||| || | || | Sbjct 2849858 TGGTGGAATTCCCTCCTTATCTTGAATTTTGGCTTTCACGTTTTCAATTGTGTCAGAGGG 2849917 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| | || || || || || || | ||| || || || || ||||| Sbjct 2849918 TTCAACTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 2849971 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || ||||| || || | | || ||||| || || ||||| || || ||||| Sbjct 2850008 TTCCTTCTGAATATTGTAATCAGACAATGTTCGTCCATCCTCCAATTGCTTGCCGGCGAA 2850067 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | |||||| ||| ||||| ||||| || || ||||| ||||| || || Sbjct 2850068 GATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATT 2850127 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | || || || | || || ||||| ||||||| ||||||||| Sbjct 2850128 TTCGATCGTGTCCGAAGGCTCGACCTCCAATGTAATAGTCTTGCCGGTCAAAGTCTTGAC 2850187 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 2850188 GAAGATTTGCAT 2850199 >seq33 Length=1899332 Score = 136 bits (150), Expect = 9e-27 Identities = 155/207 (75%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| |||||||| |||||||| | || ||||| || ||||| || ||| Sbjct 110866 TGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGAAAGAGTGCGGCCATCTTCCAACTGT 110807 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATT 288387 || || |||||||| ||||| || || ||||| ||| || ||||| ||||||||| Sbjct 110806 TTACCGGCGAAGATAAGACGTTGCTGG---TCTGGCGGGATGCCCTCTTTGTCCTGGATT 110750 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || ||||| || || |||| || | || || ||||| ||||| ||||| || Sbjct 110749 TTTGCCTTCACATTCTCAATAGTGTCTGAAGCCTCCACCTCGAGGGTGATGGTCTTACCC 110690 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || ||||| ||||||||| Sbjct 110689 GTCAGGGTTTTTACGAAGATCTGCATT 110663 >seq2 Length=4301520 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || ||||||||||| || |||||||| ||||| |||| |||| | || Sbjct 3837972 GGGATTCCCTCCTTATCCTGGATCTTGGCTTTCACATTTTCGATAGTATCGGAGGGCTCG 3838031 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || || |||||||| |||||||| Sbjct 3838032 ACCTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTGACGAAAATCTGCAT 3838081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179639331020966