Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq77 91.5 1e-13 seq114 89.7 4e-13 seq28 87.8 1e-12 >seq77 Length=1100161 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 108463 CAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACAC 108522 || ||||| | ||||||| | || |||||||||||| ||||| || ||||| ||| Sbjct 567357 CACTGGGTTCGCGATCACCGAGTCCACCACAAGTACAGCGACACAGATGCAGACCCTCAC 567416 Query 108523 AACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCC 108582 ||||| ||| | || ||| ||||| ||| | || ||||||||||||| ||| || | Sbjct 567417 AACGCAAACCGAGGTCTCTTCTTCTCTCACATTGGCTGGCTCATGATGAAGAAGAACAAC 567476 Query 108583 GACGTGA-TCTCGGCCGGTCGAAAAATGGACATGACGGACAT 108623 || || | |||| | ||| | ||||||| |||| ||||| Sbjct 567477 GAAGTCATTCTCCG-CGGAAAACAAATGGATATGAGTGACAT 567517 >seq114 Length=820404 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 108769 TACGCCCTCACCCTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCGAC 108828 ||||| ||| ||| || | |||||||| ||||| || || || |||| || || ||| Sbjct 249407 TACGCGTTCATCCTAAATGTGACGTGGCTCGTCAACTCTGCCGCTCACAAGTGGGGAGAC 249348 Query 108829 CGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTC 108888 || | |||||||| ||| || |||||| | ||| || ||| |||||| Sbjct 249347 AAGCCCTACGACAAGAGCATCAAGCCTTCCGAAAACTTGTCGGTCGCCATGTTCGCTCTC 249288 Query 108889 GGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTG 108948 || || |||| ||||||||||||||| ||||||| ||||| || | || ||| || Sbjct 249287 GGAGAAGGATTCCACAACTACCACCACACTTTCCCCTGGGACTATAAAACTGCTGAGCTG 249228 Query 108949 GGGAACGAC 108957 || ||| || Sbjct 249227 GGCAACAAC 249219 >seq28 Length=2026502 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCCACACAA 108524 ||||| | ||| ||||| |||||||||||| | |||||| ||| |||||||| ||||| Sbjct 1126681 TGGGTCCGCGACCACAGACTTCACCACAAGTTCAGTGACACAGAC-GCCGACCCTCACAA 1126739 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGAC 108579 || ||| | || |||| ||||| ||| | || ||||||||||||| ||| || Sbjct 1126740 TGCGAACCGAGGCTTCTTCTTCTCACACATCGGCTGGCTCATGATGAAGAAGAAC 1126794 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCCACACAA 108524 ||||| | ||| ||||| |||||||||||| | |||||| ||| |||||||| ||||| Sbjct 1118432 TGGGTCCGCGACCACAGACTTCACCACAAGTTCAGTGACACAGAC-GCCGACCCTCACAA 1118490 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGAC 108579 || ||| | || |||| ||||| ||| | || ||||| ||||||| ||| || Sbjct 1118491 TGCGAACCGAGGCTTCTTCTTCTCACACATCGGCTGGCTTATGATGAAGAAGAAC 1118545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381768161102568