Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq434 159 2e-34 seq12 104 2e-17 seq33 95.1 8e-15 >seq434 Length=190249 Score = 159 bits (176), Expect = 2e-34 Identities = 766/1201 (64%), Gaps = 34/1201 (3%) Strand=Plus/Plus Query 5832 TTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCACGCAAATAAACCACCC 5891 ||||| ||||||| | |||||| ||||| || ||||||||||| || |||| ||| || Sbjct 113639 TTCATGGCATTTAGTATATCACCATTGTCTGCATCTATTTCCCATGCGAATAGACCTCCT 113698 Query 5892 AAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGATCGTTGTCGTACGTA 5951 | || || || ||||| || | ||| | | |||| ||| || || ||| Sbjct 113699 AGCTTATTATTCCTCACATATTTGGCCTTTTCAATTGTCGATCTGGCGTCATCATATGTA 113758 Query 5952 ACTAAATCATTATTATCGT------AGACGTACGGAGATTGTGCAATGTTATCATAGAAT 6005 | || ||| | | || | | ||||| || | ||| || | || ||||| || Sbjct 113759 ATTAGGTCACCAGTCTCCTTCCTAAATACGTAAGGTGCTTGAGCCACTTTGTCATA--AT 113816 Query 6006 TGTAC----ACTTTCGTCGTAC---CT-ATTTACAATATCTTTATAATCGATTACGCCGC 6057 |||| |||| | | | | || ||| | || ||| | || || | ||| || Sbjct 113817 GGTACTCCCACTTGCCTTGAGCAATCTCATTGGCTATCTCTCTGTAGTCCACTACACCAT 113876 Query 6058 TTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACGGATTATTGTTTTCG- 6116 | ||| ||||| || || || | |||||| || || || |||||| || || | Sbjct 113877 CCTGCCAGGTACCCTTGACTGGGCCAGTAGCTACACCAGTGAATGGATTACCGTCTTTGT 113936 Query 6117 ACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCTACTACTAATTTAGTC 6176 | || || || || |||| || || || |||||||| ||||| || || | || | Sbjct 113937 AACCGTTG-ACTCCAGTCCAACCACGGCCGTACATAGCAACACCAACGACGATCTTCTTA 113995 Query 6177 GAATCGACATTTTGATTTAACAATCTGTTAATAGCAAAATGGGTTGTGTAATTTTCGTTA 6236 | | ||| ||| |||| || | | | || | ||||||||| | || || Sbjct 113996 GGACTGACTCCCTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTG 114055 Query 6237 ACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTTTCCATGGACCAAGCG 6296 || ||| | ||||||| || | | ||| || | | | || | |||||||| Sbjct 114056 GGGTTCCATGCGGGAGCGTGCAGAGCAGCTTGGTGGCCAAGAGTGTCGTTTGACCAAGCT 114115 Query 6297 CCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGTTGCGCGTCTGTATAA 6356 || || || || ||| |||| | || || | ||| | || |||| || | | || Sbjct 114116 CCCTTGAAGTCATAGCTCATCAAGAAGATGTGATCCATGTACTGTTGAGCCGCCTTGTAG 114175 Query 6357 TCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTTAGTTGCAATCGTTTA 6416 || || || | || ||||| |||| | | ||| || ||| |||| || || Sbjct 114176 TCTACCACCTGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTTCGTATTTCTTG 114235 Query 6417 CCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTTTAAAAGTATT--GTAT 6474 ||| |||| || | ||||||||| || | | ||||| | || ||| Sbjct 114236 CCTGTCTTGGCAGACAGCTCGTTGAGCATCTCTCTCAGTTCCTTCATCAGCTCGACGTAG 114295 Query 6475 ATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACCTTTACCGCCCGGAA 6534 |||| || | | || | | || || ||||| || || ||||| || || | Sbjct 114296 ATGT-----GACCGTCGTCAGGGCTACCGAGATCAGGGTTAGCGCCCTTACCACCAGGGA 114350 Query 6535 ACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAAAAATTCGCGCACAC 6594 ||||||| || ||||| || |||||||| |||||||| ||||| | || || ||| Sbjct 114351 ACTCCCAGTCGATGTCCACTCCGTCGAAGAATTTCCAGGTTTCAAGGAAGTCCTTAACAG 114410 Query 6595 TATCAACAAACGTATTTCGTTTTTCGACGTCGTTTAACTGGTAAAACGGATC-GCTAAGC 6653 || || || || | || | ||| | || | | || ||||| || ||| Sbjct 114411 AGTCGACGAAGCGCTTCCTCTTAACCTTGTCAGTGAAGAAGAAGAATGGATCAGCCAAG- 114469 Query 6654 GTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTGGC-GCTTGATCGCCAT 6712 ||||| || || | || || || || | | || || | || | | || | | ||| Sbjct 114470 GTCCAGCCACCAACGGAAGGTAAGATCTTCAGGTCAGGTCT-TGCCTGTTTCAACATCAT 114528 Query 6713 TAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTCGACACCTTTTTGTGGTTT 6772 | ||| || ||||| || ||||| ||||| || ||| | | | ||| ||||||||||| Sbjct 114529 CAGCTGGCCGAAGTTACCCTTGTAGGGTTCATTCCAGGACGCCAAACCCTTTTGTGGTTT 114588 Query 6773 TTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATCTTTTCGGCCGGCGCACGA 6832 ||||| ||| |||| || || || | ||||||||| |||| | |||| ||| || Sbjct 114589 CTGAAGAGCTGCCCAAGGGTCGTGGATCGATACTTTGAAGTCTTCCCTGCCGCTGCAGGA 114648 Query 6833 TTTTTGCAACGCCTC-AAACGAACTGGGTATTTGTTGTTTAAGCGCATCGTTTACACCAT 6891 | ||||| || | |||| || | |||| || | || | ||||| | |||| Sbjct 114649 TCGTTGCAGAGCTTGGAAACTGCCTTCG-ATTTCTT--TCAAACTG-TCGTTGATGCCAT 114704 Query 6892 CGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAAGATTAGGAATGGGAATTT 6951 | || || || ||||| || || ||||||| | ||| |||||||| || ||||| | Sbjct 114705 CTCCACCGCAGATTGGGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTACGC 114764 Query 6952 TGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAAAGTAAGCGCCCACAACAT 7011 |||| |||| | | || ||| || |||||||| || ||||||||||| ||||| | Sbjct 114765 GGTCGACGGGGAACTTCCTGGGGTAGACGCCCCATTCGACGAAGTAAGCGCCAACAACCT 114824 Query 7012 T 7012 | Sbjct 114825 T 114825 >seq12 Length=2918994 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | |||||| || | ||| | ||| || || || ||||| || |||| Sbjct 2852923 CCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAA 2852982 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| |||| ||||||||||| ||| | || || || | ||| ||||| | || Sbjct 2852983 AGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGA 2853042 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| || || |||||| ||||| | | | || || | | |||||| Sbjct 2853043 ATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCACC 2853102 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGT 39724 || || || || ||||| ||||| ||||| || || ||||||||||||| || Sbjct 2853103 TCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCATGTTGT 2853154 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||||||||| ||| || || | || ||||||||| ||||| || || | Sbjct 2852695 CCTCCGCGCAAACGCAATACTAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAT 2852754 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || |||| |||| ||||| ||||| ||| |||| || || || |||||||| | || Sbjct 2852755 AATGTGCGTCCATCTTCCAACTGTTTGCCGGCAAAGATCAATCGTTGCTGATCAGGTGGG 2852814 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || || || ||||| ||||| | | | |||||| | || || Sbjct 2852815 ATACCCTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATTGTGTCAGAAGGCTCAACC 2852874 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || ||||| || || || ||||||||||| || ||||| Sbjct 2852875 TCTAAAGTGATGGTTTTGCCAGTCAATGTTTTTACGAAAATTTGCAT 2852921 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || ||||| || | ||| || || || ||||||||||| | Sbjct 2852467 CCACCACGCAGACGAAGGACCAAGTGGAGAGTCGACTCCTTCTGGATATTATAATCAGAA 2852526 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| || || ||||| || | || || | |||||||| || | ||| Sbjct 2852527 AGAGTGCGGCCATCCTCTAACTGTTTGCCTGCGAAGATCAGTCGCTGCTGGTCTGGGGGA 2852586 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || |||||| ||| | | | | |||||| | || || Sbjct 2852587 ATACCTTCCTTATCCTGTATTTTGGCTTTGACATTTTCAATTGTGTCAGACGGCTCAACT 2852646 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| |||||||| || ||||||||||||||||| || ||||| Sbjct 2852647 TCTAAAGTTATTGTTTTGCCAGTTAAAGTTTTTACGAATATTTGCAT 2852693 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| ||||| || || | |||| ||| ||||| ||||| ||||||| Sbjct 2850201 CCACCGCGCAGACGAAGTACTAAGTGTAGAGTGGATTCCTTTTGAATATTGTAATCGGAA 2850260 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| | || |||| ||||| ||| | || || || ||||||||||| | || Sbjct 2850261 AGTGTGCGACCGTCTTCCAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGATCTGGTGGA 2850320 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| ||||| ||||| | | | ||||| | | ||| || Sbjct 2850321 ATACCTTCCTTGTCCTGGATTTTGGCTTTAACATTTTCAATAGTGTCGGAGGGTTCAACT 2850380 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || || || || || ||||| |||||||| ||||| Sbjct 2850381 TCTAGGGTGATAGTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 2850427 >seq33 Length=1899332 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||| || | |||| ||| ||||| || ||||| || | | | ||| |||| Sbjct 110875 AGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGAAAGAGTGCGGCCATCT 110816 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||| ||||| ||| | || || | ||| ||||| || | || | ||| |||||||| Sbjct 110815 TCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGGATGCCCTCTTTGTCC 110756 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 |||||| || | || | | ||||||| ||||| || | || || || Sbjct 110755 TGGATTTTTGCCTTCACATTCTCAATAGTGTCTGAAGCCTCCACCTCGAGGGTGATGGTC 110696 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| | |||||||||||||||||||| Sbjct 110695 TTACCCGTCAGGGTTTTTACGAAGATCTGCAT 110664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347365379133701