Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq33 111 2e-19 seq416 87.8 2e-12 >seq33 Length=1899332 Score = 111 bits (122), Expect = 2e-19 Identities = 188/271 (69%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 110199 ATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTT 110258 ||| ||||||| || | |||||| || | ||| | | |||| | ||| | ||||| Sbjct 686116 ATTTAGATTCTGAGTTATAGTCTTAGTAACTTCCTTTAATTTGGTGAAATTATATGTTTT 686057 Query 110259 CGTCTCCTT-ATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCT 110317 ||| || | |||||||| | |||||| || || ||||||||||||| | Sbjct 686056 GTCCTCATTCACAAACATATTT----AAAGCAATTGATGCTAGATTGCACACAGCCACTT 686001 Query 110318 CGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCA 110377 | ||| ||||||||| | |||||| || ||||||||| | ||||| ||||| Sbjct 686000 CATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAGTTGCTGCATTTAATAGTACCCA 685941 Query 110378 AGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAG 110437 ||||||| || || ||| ||||||| ||| ||||| ||||||||||| || || | Sbjct 685940 AGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTATAAAGCATGTATGGAGTTCCTG 685881 Query 110438 TTTCCGTCTGTGACTTGAGAATGGCCTTCCA 110468 |||| |||| | || ||| || ||||| Sbjct 685880 TTTCAACTTGTGCTTCGATAATAGCTTTCCA 685850 >seq416 Length=155529 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/182 (71%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 119517 TCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTT 119576 ||||| | ||| || |||||||| ||||| | ||||||||| | ||| | ||||| Sbjct 138915 TCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCGCGCTTCTTC 138856 Query 119577 AGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCG 119636 | ||||||||| | |||||| ||||| ||||| ||||| || || || || || Sbjct 138855 ATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACTGCAGCAAAGGCA 138796 Query 119637 AATAGACGCTCAGCAAAAGGTCGAGACT---TGTCGAACCACTTGAGAGCCCAGTTGGCC 119693 | | |||||||||||| | |||| || | | |||||| || ||||||| ||| Sbjct 138795 ATGATACGCTCAGCAAATGTGGCTGACTTGCTGGCAATCCACTTCAGGGCCCAGTCAGCC 138736 Query 119694 TT 119695 || Sbjct 138735 TT 138734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588968659886600