Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq33 500 1e-136 seq401 107 2e-18 seq416 95.1 1e-14 >seq33 Length=1899332 Score = 500 bits (554), Expect = 1e-136 Identities = 1186/1782 (67%), Gaps = 30/1782 (2%) Strand=Plus/Minus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || ||||| |||| || | ||| |||| || || |||||||| ||||| || Sbjct 686944 TTTGTCAACAGTGAACTGGATAGCATTTGCGGCTGGCTTCGTGCGTAAATAGTACATTCC 686885 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || ||||| || | |||| |||||||||| ||| || |||||| |||| | || Sbjct 686884 CGTTTTTAAGCCCATTTTCCACGCATAGAAATGAATAGATGTCAATTTACCATAATTTGG 686825 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | || ||||||||| | ||||| ||||||||||||||||| ||||| ||||| || Sbjct 686824 TTCAGCAACATGAATATTGAAGGATTGGCTCTGATCAATAAATGCCCCTCTGTCAGCAGC 686765 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| | || | || | | ||||| || |||||||| | | | || || Sbjct 686764 CATTTGTATTGTTGTTTTTACAGACACTTCCCAGACAGTTTTATATAAGTCCCTTATATC 686705 Query 47213 TTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgttttttaa 47269 || || | | || | |||||||||||||||| || | || || ||||| | Sbjct 686704 TTTAGGAATTGCTTCAATATTTTGAATAGATCCATTATTGTGGATGATAAGATTTTTCAT 686645 Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 || | ||| | | ||||||||| | ||| | |||| ||||||||| ||| Sbjct 686644 ATCTTCATCCCATAAATCAGCTTCAGTTAAATCTCGTAACAAATGATGATTAACAACTTG 686585 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 ||||| || || | |||| | ||| || || ||| ||||||| | ||||| Sbjct 686584 GAATTCACCTGACAAGACTCGTCTCTGATAAATGTTGGAAGTAAATGGTTCAAATGATTC 686525 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATT 47449 ||||||||| || ||||||||||| ||||| || ||||| | || | ||||| | ||| Sbjct 686524 ATTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGAATT 686465 Query 47450 TCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGG 47509 ||| | |||| ||| || | ||||| ||| | |||| || Sbjct 686464 TCTAAGACCATGTTTGGCAATTTTTTCTTTGAGTGACACCCAATTCCACAAGTCTGTGGG 686405 Query 47510 AACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGT 47569 |||||| | ||||||||| | || |||| ||| ||| | || | ||| || Sbjct 686404 GGTTTTATTCCACATATCATATTGCAATATACCTTGACTGGCAGGACAGCCTTCATAAGT 686345 Query 47570 TTTATAAGGACCGTATAGTTT--AGCGAGTTCACAACTTGCTTCCAATGCACTATAATAT 47627 | ||| ||| ||| || ||| | |||||||| ||||| | ||| | |||||| Sbjct 686344 CTCATA--GACGCCATACTTCTCAGCTAACTCACAACTGGCTTCTAGTGCCCCATAATAA 686287 Query 47628 ATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGG-ATANNN 47686 |||||||||||||||| | |||| || ||||| | ||| |||| ||| Sbjct 686286 ATTGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTCACTTTCGTAAGGTATACGC 686227 Query 47687 NNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTT 47746 |||| ||| || |||||||| || ||||| || || |||| || | | Sbjct 686226 ATTAAAACA-AATGCATCAGCTAATCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCAT 686168 Query 47747 ATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANN 47806 ||| || | || ||||| | |||||| | |||| ||| ||||||||||||||| Sbjct 686167 ATTTGAGTTTTTTGCCTCTGGCACTGGATAATAATTTACATCAATAATTTTATTTAGATT 686108 Query 47807 NNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTAT--TTATA 47864 || ||| ||||||| | |||| | | | || | | || Sbjct 686107 CTGAGTTATAGTCTTAGTAACTTCCTTTAATTTGGTGAAATTATATGTTTTGTCCTCATT 686048 Query 47865 -ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAG- 47922 |||||| |||| | || || ||||||||||| || ||||| || |||| || || || Sbjct 686047 CACAAACATATTTAAAGCAATTGATGCTAGATTGCACACAGCCACTTCATCTG-ATGAGG 685989 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 | |||| || ||||||| || | || | ||||| ||||||||||| || | || | Sbjct 685988 TGTATTCTACAATTTCAGTGCACAAGTTGCTGCATTTAATAGTACCCAAGTTCTTTTGGT 685929 Query 47983 TATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 | | | || |||| || || |||||||| | || ||||| ||||| | || | Sbjct 685928 TGCTTTTTCTATTGCATGAATCTTTATAAAGCATGTATGGAGTTCCTGTTTCAACTTGTG 685869 Query 48043 ATTCAATGATAGATTTCCAAACAGTCCTAGC-CT---TTATAACAGCTCTAGCTTTATTA 48098 ||| || |||| |||||||| | ||| || || | || ||| | Sbjct 685868 CTTCGATAATAGCTTTCCAAAGAACTTGAGCTCTCACTTGTTTCACGA--AGCG--ACCC 685813 Query 48099 TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCC 48157 || | ||| ||||| ||| || |||||||| || || | ||| | | ||| || Sbjct 685812 TCTTTTTCATATTTCTCATACAAAGCTTCAAATTCCTCACCCCA-ACAGTCTGCTAGTCC 685754 Query 48158 AGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAA 48217 ||||||||||| || ||||| | |||||| | || ||| |||||| |||| || Sbjct 685753 AGGACATTCATGGGGGCACATGATACTCCAATCTTGATTGCTTTCTACTCTTTTCATGAA 685694 Query 48218 TATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCAC 48276 | || |||||||| | ||| ||| |||| || || | | | |||||| || ||| Sbjct 685693 CAAGTCAGGTATCCATAAAGC-ATAGAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAG 685635 Query 48277 TATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 | ||| |||| | ||||| || || | |||||||||||||||||||||||| ||||| | Sbjct 685634 TGTTCTTTTTCAAATCAAGGAATTCAAATATATCAGCATGCCATGGTTCTAAGTATATGG 685575 Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396 | | | | || |||| ||||||||||||||| |||| ||||| ||||| ||||| || | Sbjct 685574 CAAATGCGCCGGGTCTTTTATTACCTCCTTGGTCTACATATCGAGCAGTGTTGTTGTACA 685515 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 |||||||||| || || | |||||| || | |||||| || || | |||||| |||| Sbjct 685514 CTCTTAACATGGGTACTAGACCATTAGAGACACCATTTGTACCAGCTATATAAGTTCCCT 685455 Query 48457 TAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 | ||||| || | | || || || |||||| ||||| || ||||| || || || Sbjct 685454 TTGCTCTAATGCAGT-GTACATG-AAGACCTATCCCACCAGCTGACTTAGAAATGAGGGC 685397 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 ||| |||| | || ||||||||||| || || |||||||| |||| || ||||| Sbjct 685396 ACATTGTTTTAACGTGTCATAAATTCCCTCAATGCTATCATCCCTCATTGCTATAAGAAA 685337 Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 || ||| | ||| || | |||| ||| || | |||||| |||||| | Sbjct 685336 GCATGAAGATAATTGTGGTCGTGGAGTTGCTGCTGAGAAAAGAGTTGGACTTGCATGTGT 685277 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATG 48694 ||| |||| ||||| | | || || || | ||| | || || || ||| Sbjct 685276 AAAATATTTTTCTGACAGAAGATTGTAGGTGTTTATAGCCCCCTCAATGTCTTCGCCATG 685217 Query 48695 TATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 ||| |||||||| || ||||| | ||||| || || ||||| Sbjct 685216 TATTCCTATAGAAACTCGCATGAGCATATGCTGTGGCCTTTC 685175 >seq401 Length=172835 Score = 107 bits (118), Expect = 2e-18 Identities = 245/366 (67%), Gaps = 7/366 (2%) Strand=Plus/Minus Query 136632 TAATGACTCC--TATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATT 136689 |||||||||| ||||| || |||||||| ||| | || |||| || || | ||| | Sbjct 20942 TAATGACTCCGGTATTA--CCTATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGGCAAT 20885 Query 136690 TAAAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGT 136749 || || | ||| || ||||| ||| |||| |||||||||||||| ||| | |||||||| Sbjct 20884 GAAGAAATGTCCTAACGGAATGTTTTCAGAGATAAAATATGACGGTGAAAGAGTACAGGT 20825 Query 136750 TCACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACA 136809 || || || || || | ||| || ||| ||| | ||||| || | ||| Sbjct 20824 GCATAAAAAAGGGAATGAGTTTAAATATTTCTCGAGAGCATTAAAACCTGTTATGGCACA 20765 Query 136810 TAAAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTAT 136869 |||||| | || |||| || ||| |||| |||| || ||| | | | | || Sbjct 20764 TAAAGTCAGTCATTTTAAAGATTATTTACCGCAAGCATTCCCAAAGGGGACCGATTTGAT 20705 Query 136870 TTTAGATTCAGAAATAGTACTAGTAGATAAAAATA---ATAAACCATTACCATTTGGCAG 136926 | | ||| | ||| | | | |||||| |||| || || || |||||||| | Sbjct 20704 TCTTGATGCTGAAGTTTTGATGGTAGATGTGAATACAGGAAAGCCTTTGCCATTTGGTAC 20645 Query 136927 TTTGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGA 136986 | ||||| |||||| || |||| || || || | | ||| | ||||| ||||| Sbjct 20644 ACTAGGTATCCATAAACAGTCTGAATTCAAAGACGCACAAGTGTGTCTGTTTGTGTTTGA 20585 Query 136987 TTGTTT 136992 ||||| Sbjct 20584 CTGTTT 20579 >seq416 Length=155529 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 || |||| ||| ||||| ||||| ||||| || ||||||||||| || || ||||| | | Sbjct 137855 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 137796 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAA 19544 || |||||| |||| ||||| || ||||||||||| Sbjct 137795 CAGATATCAGGATACTGTATTGGGAATATAACAAA 137761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562101794719080