Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq434 170 2e-37 seq33 109 5e-19 seq12 91.5 1e-13 >seq434 Length=190249 Score = 170 bits (188), Expect = 2e-37 Identities = 763/1194 (64%), Gaps = 27/1194 (2%) Strand=Plus/Plus Query 105820 TTCATGGCATTGAGTAAATCGCCGTTATCGGCATCTATTTCCCAAGCAAACAAACCGCCC 105879 ||||||||||| |||| ||| || || || |||||||||||||| || || | ||| || Sbjct 113639 TTCATGGCATTTAGTATATCACCATTGTCTGCATCTATTTCCCATGCGAATAGACCTCCT 113698 Query 105880 AGTTTGTT-TCGATCGACATATTTAACCTTGCCCAAAACAGAATCGACGCTATCAAACGA 105938 || || || | || |||||||| |||| | | || | || |||| | | Sbjct 113699 AGCTTATTATTCCTC-ACATATTTGGCCTTTTCAATTGTCGATCTGGCGTCATCATATGT 113757 Query 105939 AATTAAATCCNNNNNNNNNNNNNCAAAAACGTACGAAGCTTGAGCGACATTGTCAAACGT 105998 ||||| || ||| ||||| | |||||||| || |||||| | Sbjct 113758 AATTAGGTCACCAGTCTCCTTCCTAAATACGTAAGGTGCTTGAGCCACTTTGTCATAATG 113817 Query 105999 GTACACGTACGTG--TTCAGTTTTGT--TTGA--ATCTGTCGGTAATCTACGACGCCGTC 106052 |||| | || || || || | | ||| |||| || ||| || || || || || Sbjct 113818 GTACTCCCACTTGCCTTGAGCAATCTCATTGGCTATCTCTCTGTAGTCCACTACACCATC 113877 Query 106053 CTCCCAAGTGCCCGACAC-GGGCCCGTTGCCGATTCCCGAAAAATAGTTGTTGCCAGTAT 106111 || ||| || ||| || ||||| || || | || | || || | | | | Sbjct 113878 CTGCCAGGTACCCTTGACTGGGCCAGTAGCT-ACACCAGTGAATGGATTACCGTCTTTGT 113936 Query 106112 AATTGGTCACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCTACGATTATTTTGTTGG 106171 || | | || || ||||| || ||||||||||| ||||| || |||| || || || | Sbjct 113937 AACCGTTGACTCCAGTCCAACCACGGCCGTACATAGCAACACCAACGACGATCTTCTTAG 113996 Query 106172 GATCGACGTCTTGTTTCAGCAACGCATCGACCGCGTAATGTGTTGTGTATTTTTCTTCGG 106231 || ||| | || || || | ||| || | | |||||||| | || | || Sbjct 113997 GACTGACTCCCTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTGG 114056 Query 106232 AATTCCAACTAGGCGCATATACCGTCGTTTGATAGCCCAGATCTGT-GTTCGACCACGCC 106290 ||||| || || | | | | ||| | ||| ||| ||| ||| ||||| || Sbjct 114057 GGTTCCATGCGGGAGCGTGCAGAGCAGCTTGGTGGCCAAGAG-TGTCGTTTGACCAAGCT 114115 Query 106291 CCTTTAAAATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTGTGCGTCGTTATAG 106350 || || || || || ||||| | ||| || | |||| || | ||| || | || ||| Sbjct 114116 CCCTTGAAGTCATAGCTCATCAAGAAGATGTGATCCATGTACTGTTGAGCCGCCTTGTAG 114175 Query 106351 TTTACCACGGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAATTCGTAGAATTTG 106410 | |||||| ||| ||||| | || | ||| || || || | |||||| ||| Sbjct 114176 TCTACCACCTGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTTCGTATTTCTTG 114235 Query 106411 CCCGTTT--GCAGTTCTAATTCGTCTAGCATGGCGCGCAACTCTTGCAACAGCACGACAT 106468 || || | |||| | |||| ||||| | | || || | || |||| |||| | Sbjct 114236 CCTGTCTTGGCAGAC--AGCTCGTTGAGCATCTCTCTCAGTTCCTTCATCAGCTCGACGT 114293 Query 106469 ATGTTTCGGCGTCGCGTTCCGCATCGCCCAAAGAAGGATTGGCCCCTTTGCCGCCTGGAA 106528 | | | ||||| || | || | | ||| || || || || || || || | Sbjct 114294 AGATGTGACCGTCG---TCAGGGCTACCGAGATCAGGGTTAGCGCCCTTACCACCAGGGA 114350 Query 106529 ATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAATTCCTTTACAG 106588 | ||||| || || || || || || || |||||||| || | || ||||| |||| Sbjct 114351 ACTCCCAGTCGATGTCCACTCCGTCGAAGAATTTCCAGGTTTCAAGGAAGTCCTTAACAG 114410 Query 106589 AATTTACAAACACGTTTCTTTTTTCAAC---GTCA-TGCATAAAATAGAAGGGGTCTGAT 106644 | | || || || ||| | || ||| |||| || | || | |||| || || | Sbjct 114411 AGTCGACGAAG-CGCTTCCTCTT--AACCTTGTCAGTGAAGAAGA-AGAATGGATCAGCC 114466 Query 106645 AGCGTCCAACCGCCTATAGACGGAAGCACTTTTAAATGCGGATTTGCCAATTTAGCCGCC 106704 | ||||| || || | || || | | || | | || ||||| ||| | | Sbjct 114467 AAGGTCCAGCCACCAACGGAAGGTAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAACATC 114526 Query 106705 ATCAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTTTGCGGC 106764 |||| ||| || |||||||||||||| || || ||||| | | || || ||||| || Sbjct 114527 ATCAGCTGGCCGAAGTTACCCTTGTAGGGTTCATTCCAGGACGCCAAACCCTTTTGTGGT 114586 Query 106765 TTCTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCTTTGCAT 106824 ||||| | || ||||| || ||||| || || ||||| || || | | || |||| Sbjct 114587 TTCTGAAGAGCTGCCCAAGGGTCGTGGATCGATACTTTGAAGTCTTCCCTGCCGCTGCAG 114646 Query 106825 GATTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATTCCATCA 106884 ||| ||||| || || ||||| || ||| ||| || ||||| || ||||| Sbjct 114647 GATCGTTGCAGAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCCATCT 114706 Query 106885 CCGCCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGGACTTTA 106944 || |||||||| || || |||||||||| | ||| | | ||| || | || || Sbjct 114707 CCACCGCAGATTGGGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTACGCGG 114766 Query 106945 TCTACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACGCGGCGACA 106998 || ||||| || || | | || |||||||||||||| || || ||| | ||| Sbjct 114767 TCGACGGGGAACTTCCTGGGGTAGACGCCCCATTCGACGAAGTAAGCGCCAACA 114820 >seq33 Length=1899332 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || |||||||| | |||||||| ||||| ||| ||| ||| |||| Sbjct 110663 AATGCAGATCTTCGTAAAAACCCTGACGGGTAAGACCATCACCCTCGAGGTGGAGGCTTC 110722 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | ||| ||||||| ||||||||||| | || ||| || Sbjct 110723 AGACACTATTGAGAATGTGAAGGCAAAAATCCAGGACAAAGAGGGCATCCCGCCAGACCA 110782 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | |||||||| || || ||||| ||||||||| ||| | | || ||||| Sbjct 110783 GCAACGTCTTATCTTCGCCGGTAAACAGTTGGAAGATGGCCGCACTCTTTCAGACTATAA 110842 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| ||||| ||||| ||||| ||| |||| | || | ||||||| Sbjct 110843 CATCCAAAAGGAATCCACTCTTCACTTGGTGCTCAGGCTGAGAGGAGG 110890 >seq12 Length=2918994 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || ||||| || || |||||||| || ||| || ||||| Sbjct 2423518 ATGCAGATTTTCGTGAAGACATTGACTGGAAAAACCATCACTCTTGAAGTTGAGCCTTCT 2423577 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||| |||||| | ||| ||| || Sbjct 2423578 GACACTATTGAGAATGTAAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 2423637 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| ||||| || | |||||| || | | ||||| ||| Sbjct 2423638 CAGCGTCTTATCTTTGCCGGCAAGCAGCTTGAAGATGGACGCACCCTTTCTGATTACAAC 2423697 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || |||||||||||||| || ||| |||| || | | ||||| || || Sbjct 2423698 ATCCAAAAAGAATCTACCCTTCACTTGGTCTTGCGTCTGCGAGGTGGTAT 2423747 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || || || || || || ||||| || || ||||| Sbjct 2850199 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATTACATTGGAGGTCGAGCCTTCG 2850140 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | || |||| || |||| || |||||||||||| | || ||| || Sbjct 2850139 GACACGATCGAAAATGTCAAAGCCAAAATTCAA-GACAAAGAGGGAATTCCACCAGACCA 2850081 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||| | ||||| || ||||| |||||||| ||| ||| || | ||||| || Sbjct 2850080 ACAGAGATTGATCTTCGCCGGCAAGCAATTGGAGGATGGACGAACATTGTCTGATTACAA 2850021 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||||| || |||||||| |||| Sbjct 2850020 TATTCAGAAGGAATCTACGTTGCA 2849997 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || ||||||||||| || || |||||||| || || || ||||| Sbjct 2852921 ATGCAAATTTTCGTAAAAACATTGACTGGCAAAACCATCACTTTAGAGGTTGAGCCTTCT 2852862 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| || || ||||| | || ||||| Sbjct 2852861 GACACAATCGAAAATGTTAAAGCCAAAATCCAGGATAAGGAGGGTATCCCACCTGATCAG 2852802 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || || | |||||||| |||||||| ||||||||| | | | ||| | || || | Sbjct 2852801 CAACGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGACGCACATTAT--CAGACTACA 2852744 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || |||||||||||||| || ||| | ||||| | || || ||||| || Sbjct 2852743 ATATCCAAAAAGAATCTACCCTTCACTTAGTATTGCGTTTGCGCGGAGGAAT 2852692 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| ||||| || ||||||||||| || || ||| || || || Sbjct 2423061 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACTCTTGAAGTTGAGCCATC 2423120 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || || |||| || |||||||| || | ||| ||||| Sbjct 2423121 CGACACTATTGAAAATGTAAAAGCCAAAATTCAA-GACAAAGAAGGCATTCCCCCAGATC 2423179 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||| |||| ||||| || || || || || ||||| | || || | || || | Sbjct 2423180 AGCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACA 2423239 Query 28732 ACATTCAAAAAGAATCTACTCTGCAC 28757 |||| |||||||||||||| || ||| Sbjct 2423240 ACATCCAAAAAGAATCTACGCTCCAC 2423265 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || || || || |||||||| || || |||||||| Sbjct 2424430 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACCATCACTCTGGAGGTAGAACCTTCT 2424489 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||| |||||| | ||| ||| || Sbjct 2424490 GACACTATTGAGAATGTAAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 2424549 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| ||||| || |||||||| ||| | | || || ||| Sbjct 2424550 CAGCGTCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGACTACAAC 2424609 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||||| ||||| |||||| |||| |||| || Sbjct 2424610 ATTCAGAAAGAGTCTACTTTGCATTTGGTTTT 2424641 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| ||||| |||||||||||||| ||| ||||| || Sbjct 2849971 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 2849912 Query 28614 GAGACGGTGGCCGATCT-CAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | |||| |||| || || || |||||| | || |||||| Sbjct 2849911 GACACAATTGAAAACGTGAAAGCCAAAATTC-AAGATAAGGAGGGAATTCCACCAGATCA 2849853 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || || || ||||| || | ||||| ||| | ||||||| || Sbjct 2849852 ACAAAGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGCACTCTTTCCGATTACAA 2849793 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||| || || || | || |||| || |||| || || Sbjct 2849792 TATTCAAAAGGAATCAACACTTCATTTAGTTCTAAGGTTGAGAGGTGGAAT 2849742 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || ||||| || || || || |||||||| ||| ||| || ||||| Sbjct 2424658 ATGCAGATTTTCGTAAAGACCTTGACTGGAAAAACCATCACCCTAGAAGTTGAGCCTTCT 2424717 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| || ||| ||||| || ||| | ||| ||| || Sbjct 2424718 GATACCATCGAAAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 2424777 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| ||||| || | |||||| ||| | | ||||| || Sbjct 2424778 CAGCGTCTTATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCTGATTACAAT 2424837 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||||||||| || ||| |||| || | | ||||| || || Sbjct 2424838 ATCCAGAAAGAATCTACCCTTCACTTGGTCTTGCGTCTGCGAGGTGGTAT 2424887 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || |||||||| || || ||| ||| ||||| Sbjct 2425342 ATGCAAATTTTCGTGAAGACCCTCACTGGTAAAACTATCACTCTTGAAGTGGAGCCTTCT 2425401 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||| |||||| | ||| || || Sbjct 2425402 GACACTATTGAGAATGTAAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAG 2425461 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| ||||| || | |||||| || | | || |||||| Sbjct 2425462 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGTACCCTTTCTGACTATAAC 2425521 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || |||||||| || ||| |||| || | | ||||| || || Sbjct 2425522 ATTCAGAAGGAATCTACCCTTCACTTGGTCTTGCGTCTGCGAGGTGGTAT 2425571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425399630932863