Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq33 159 2e-34 >seq33 Length=1899332 Score = 159 bits (176), Expect = 2e-34 Identities = 271/390 (69%), Gaps = 2/390 (1%) Strand=Plus/Minus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||| | | ||| || || || || ||||| | ||||| |||| ||||| || | Sbjct 685710 TCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGCATAGAATAGCTCTCTGGCACGG 685651 Query 25982 ATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 | ||||||||| || ||| |||||||| | ||| | ||| ||||| ||||| | ||||| Sbjct 685650 ACTTCTTCTTTCCCAGTG-TTCTTTTTCAAATCAAGGAATTCAAATATATCAGCATGCCA 685592 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 ||||||||| || || ||||| || |||||| || ||||| ||||| |||| Sbjct 685591 TGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACCTCCTTGGTCTACATATCG 685532 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160 ||||| | ||| | ||| | ||||| || |||| ||| | || | || ||||| | Sbjct 685531 AGCAGTGTTGTTGTACACTCTTAACATGGGTACTAGACCATTAGAGACACCATTTGTACC 685472 Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220 | || | | ||| | | |||||| ||| |||||| ||| || |||||||| | Sbjct 685471 AGCTATATAAGTTCCCTTTGCTCTAATGCAGTGTACATGAAGACCTATCCCACCAGCTGA 685412 Query 26221 TTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280 || ||||| ||||| | | | || || ||||||| | ||||||||| | | Sbjct 685411 CTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAAATTCCCTCAATGCTATCATCCCT 685352 Query 26281 CATTCCTAATAAAAAACAAGAAGATAATTG 26310 |||| ||| | ||| || ||||||||||| Sbjct 685351 CATTGCTATAAGAAAGCATGAAGATAATTG 685322 Score = 127 bits (140), Expect = 1e-24 Identities = 120/151 (79%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAA--GTTTGAAGTGAATGGTTCAAAACATT 25073 ||||| || ||||| |||| ||| |||||| ||| ||||| ||||||||||| ||| Sbjct 686583 AATTCACCTGACAAGACTCGTCTC--TGATAAATGTTGGAAGTAAATGGTTCAAATGATT 686526 Query 25074 CATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAAT 25133 |||||||||| || ||||||| ||| ||||| ||||||||| |||| |||||| |||| Sbjct 686525 CATTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGAAT 686466 Query 25134 TTCTCAAACCATATTTAACAATCTCTTGTTT 25164 |||| | ||||| ||| |||| | || ||| Sbjct 686465 TTCTAAGACCATGTTTGGCAATTTTTTCTTT 686435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253036925326775