Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq12 170 3e-37 seq416 104 3e-17 >seq12 Length=2918994 Score = 170 bits (188), Expect = 3e-37 Identities = 182/237 (77%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| || ||||| ||||| |||||||||||||| ||| ||| Sbjct 2849971 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 2849912 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||||| ||||| |||||||| || || || || ||||| ||| Sbjct 2849911 GACACAATTGAAAACGTGAAAGCCAAAATTCAAGATAAGGAGGGAATTCCACCAGATCAA 2849852 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || || |||||||| ||||| | ||| | || ||||| ||| Sbjct 2849851 CAAAGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGCACTCTTTCCGATTACAAT 2849792 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAAAA 156056 || || |||| | | || ||||||||||| |||| || ||||| || ||||||| Sbjct 2849791 AT-TCAAAAGGAATCAACACTTCATTTAGTTCTAAGGTTGAGAGGTGGAATGTAAAA 2849736 Score = 116 bits (128), Expect = 5e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||||||||| ||||| || || ||||| || || |||| Sbjct 2852921 ATGCAAATTTTCGTAAAAACATTGACTGGCAAAACCATCACTTTAGAGGTTGAGCCTTCT 2852862 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| ||||| || ||||| || || || || || || || Sbjct 2852861 GACACAATCGAAAATGTTAAAGCCAAAATCCAGGATAAGGAGGGTATCCCACCTGATCAG 2852802 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | |||||| || ||| | |||||| | || |||||||| || ||| Sbjct 2852801 CAACGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGACGCACATTATCAGACTACAAT 2852742 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || ||||| | || ||||| ||||| || Sbjct 2852741 ATCCAAAAAGAATCTACCCTTCACTTAGTATT 2852710 Score = 109 bits (120), Expect = 8e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||||||||| | ||||| || ||||| ||||| || || |||||||| || || Sbjct 2852694 AATGCAAATATTCGTAAAAACTTTAACTGGCAAAACAATAACTTTAGAAGTTGAGCCGTC 2852635 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||| || ||| |||||||| ||||| ||||| || || ||||| || Sbjct 2852634 TGACACAATTGAAAATGTCAAAGCCAAAATACAGGATAAGGAAGGTATTCCCCCAGACCA 2852575 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||| | || || || ||| | || ||| | | ||| | || |||||||| Sbjct 2852574 GCAGCGACTGATCTTCGCAGGCAAACAGTTAGAGGATGGCCGCACTCTTTCTGATTATAA 2852515 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| || ||| |||| || || || || Sbjct 2852514 TATCCAGAAGGAGTCGACTCTCCACTTGGT 2852485 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||| || || ||||||||||| || ||||| ||| Sbjct 2850199 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATTACATTGGAGGTCGAGCCTTCG 2850140 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| ||||| ||||| ||||| || || || ||||| ||| Sbjct 2850139 GACACGATCGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGACCAA 2850080 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||||| ||||| | || ||| |||| || || ||||| ||| Sbjct 2850079 CAGAGATTGATCTTCGCCGGCAAGCAATTGGAGGATGGACGAACATTGTCTGATTACAAT 2850020 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || | ||| | |||||||| | | | |||||||| Sbjct 2850019 ATTCAGAAGGAATCTACGTTGCATTTAGTCCTCCGTCTTAGAGGCGG 2849973 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||||||||| || || ||||||| || |||| Sbjct 2424658 ATGCAGATTTTCGTAAAGACCTTGACTGGAAAAACCATCACCCTAGAAGTTGAGCCTTCT 2424717 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || |||||| || || || || || || ||||| || || ||||| || Sbjct 2424718 GATACCATCGAAAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 2424777 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | |||||| |||||||| |||||| |||| | || ||||| ||| Sbjct 2424778 CAGCGTCTTATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCTGATTACAAT 2424837 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || ||||| | || ||||| || || || Sbjct 2424838 ATCCAGAAAGAATCTACCCTTCACTTGGTCTT 2424869 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| ||||| || |||||||| || | ||||| || || Sbjct 2423061 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACTCTTGAAGTTGAGCCATC 2423120 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| ||| || ||| ||||| ||||| ||||||||||| || ||||| || Sbjct 2423121 CGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCA 2423180 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || || |||| | || || |||||| | ||||| Sbjct 2423181 GCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGA 2423216 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| ||||| || | |||||||| |||| Sbjct 2425570 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAGACTATCACCCTTGAAGTCGAGCCTTCT 2425629 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || |||||| || |||||| ||||| || ||||| || || ||||| || Sbjct 2425630 GATACCATCGAAAACGTTAAGGCTAAAATCCAAGACAAGGAAGGAATTCCCCCAGACCAG 2425689 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | || || |||||||| |||||| | ||| | || || || || Sbjct 2425690 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGACTACAAC 2425749 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| |||| || || || || Sbjct 2425750 ATCCAGAAAGAGTCGACTCTGCACTTGGT 2425778 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||||||||| || ||||||| || |||| Sbjct 2424886 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACTATCACCCTAGAAGTTGAGCCTTCT 2424945 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || || || || || || ||||| || || || || || Sbjct 2424946 GATACCATTGAAAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAG 2425005 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | ||||| |||||||| |||||| | ||| | || ||||| || Sbjct 2425006 CAGCGTCTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGTACTCTTTCTGATTACAAC 2425065 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || ||||| | || ||||| || || || Sbjct 2425066 ATCCAGAAAGAATCTACCCTTCACTTGGTCTT 2425097 >seq416 Length=155529 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481 ||| | || || ||||| || | |||||| ||||| ||||| || | | |||||||| Sbjct 138482 TCTCTAATGTATGTGTCAATGAGCAAAGAGTACATCTCAGAGTGAACATTCTCCATAGCA 138423 Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCT 18541 ||||| || | ||| || |||| || || | ||| | ||| | | || | ||| Sbjct 138422 ATCTGGAATCCATAGAAGCATCTGGCTTCAGTCACTTGCACCTCTTGAGAGAAGCGTTCC 138363 Query 18542 ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATG 18601 || || ||||||||||| || || |||| | || || || |||| |||| ||| ||| Sbjct 138362 ACTAAGTTCTCATTAACAATGCCATCAGACGCAGCAAAGAAAGCCAGCACATGTTTGATG 138303 Query 18602 AAATGTTTTTCATTATCCTTGAGATTGTTCCATTC 18636 || ||| | ||| | ||||||||||| | ||| || Sbjct 138302 AAGTGTCTCTCACTGTCCTTGAGATTCTCCCAGTC 138268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731862879045200