Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq12 150 4e-31 seq416 91.5 3e-13 >seq12 Length=2918994 Score = 150 bits (166), Expect = 4e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | ||||| ||| || |||||| || || Sbjct 2852920 ATACCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCG 2852979 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| ||||||||||| || || ||||| |||||||||||||| || Sbjct 2852980 GAAAGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGA 2853039 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| ||||| ||| || || || | ||| || | ||| Sbjct 2853040 GGAATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCC 2853099 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || |||| || |||||||| || || || || || | ||| |||||||| || Sbjct 2853100 ACCTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCATGTT 2853152 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 192321 ACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTC 192380 ||| |||||||| || | |||| ||||| |||||| || || |||||||| ||| | Sbjct 2852706 ACGCAATACTAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGATAATGTGCGTCC 2852765 Query 192381 ATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTT 192440 ||| ||||| ||||| || |||||||| |||| || ||||||||||| || || || || Sbjct 2852766 ATCTTCCAACTGTTTGCCGGCAAAGATCAATCGTTGCTGATCAGGTGGGATACCCTCCTT 2852825 Query 192441 ATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAAT 192500 ||| || ||||| ||| ||||| || | || || | || || |||| ||| || Sbjct 2852826 ATCCTGGATTTTGGCTTTAACATTTTCGATTGTGTCAGAAGGCTCAACCTCTAAAGTGAT 2852885 Query 192501 GGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||| ||||| |||||||| | || || ||||| Sbjct 2852886 GGTTTTGCCAGTCAATGTTTTTACGAAAATTTGCAT 2852921 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||||||||| | |||||||| || |||| || || ||||| |||||| Sbjct 2849970 ATGCCGCCTCTAAGACGGAGGACTAAATGCAACGTAGATTCCTTCTGAATATTGTAATCA 2850029 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||||||| |||| |||||||| || || || ||||| ||||||||||| || ||| Sbjct 2850030 GACAATGTTCGTCCATCCTCCAATTGCTTGCCGGCGAAGATCAATCTCTGTTGGTCTGGT 2850089 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| ||||| ||||| ||| ||||| || | || || | || Sbjct 2850090 GGAATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGAAGGCTCG 2850149 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||| || || || || || || || | || || ||||| Sbjct 2850150 ACCTCCAATGTAATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 2850199 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || |||||||| ||||| | ||| || ||| || || || Sbjct 2850426 ATACCACCACGCAGACGCAAAACTAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCT 2850485 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| ||||| || |||||||| ||||| ||||||||||| |||||| Sbjct 2850486 GAAAGAGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATCAATCTCTGTTGGTCAGGT 2850545 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || ||||| ||| ||||| || | || || | || Sbjct 2850546 GGGATACCCTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATCGTGTCAGATGGCTCG 2850605 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| |||||||| | |||||| | || || ||||| Sbjct 2850606 ACCTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 2850655 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || || || | ||| | ||| || ||||||||||||| Sbjct 2852464 ATACCACCACGCAGACGAAGGACCAAGTGGAGAGTCGACTCCTTCTGGATATTATAATCA 2852523 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || || ||||| || || ||||| | || ||| || || || Sbjct 2852524 GAAAGAGTGCGGCCATCCTCTAACTGTTTGCCTGCGAAGATCAGTCGCTGCTGGTCTGGG 2852583 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| |||||||| ||| ||||| || | || |||| || Sbjct 2852584 GGAATACCTTCCTTATCCTGTATTTTGGCTTTGACATTTTCAATTGTGTCAGACGGCTCA 2852643 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||||| ||| || ||||| |||||||| ||||| | ||||| |||||| Sbjct 2852644 ACTTCTAAAGTTATTGTTTTGCCAGTTAAAGTTTTTACGAATATTTGCATT 2852694 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || ||||| ||||||| |||||| || || || ||| Sbjct 2424659 ATACCACCACGCAGACGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCA 2424600 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| |||| || || ||||||||||| | | ||| || || || Sbjct 2424599 GAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGG 2424540 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || || || || |||||||| |||| || || | |||| Sbjct 2424539 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGTTCT 2424480 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| ||||| || || || | || |||||||| Sbjct 2424479 ACCTCCAGAGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 2424430 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || |||||||| | | || |||||||| | || | || ||| || ||||| ||||| Sbjct 2849742 ATTCCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGA-ATATTGTAATC 2849800 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || | || || | || || ||||| || || ||||| |||||||| || Sbjct 2849801 GGAAAGAGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCTTTGTTGATCTGG 2849860 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| ||||| || |||||||| ||||| ||| || || || | || || | ||| Sbjct 2849861 TGGAATTCCCTCCTTATCTTGAATTTTGGCTTTCACGTTTTCAATTGTGTCAGAGGGTTC 2849920 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| |||||||||||||||||||| ||||| | ||| || ||||| Sbjct 2849921 AACTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 2849971 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || |||||||| ||||| | ||| || ||| || || || Sbjct 2852008 ATACCACCACGCAGACGCAAAACTAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCC 2852067 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || | || || | || || || || ||||| |||| ||| || || || Sbjct 2852068 GAAAGTGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGG 2852127 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| ||||| ||| ||||| || | ||||| | || Sbjct 2852128 GGAATTCCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCGATTGTGTCTGAAGGCTCA 2852187 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||| |||||||| || || || || || | || || ||||| Sbjct 2852188 ACCTCTAGAGTGATGGTTTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 2852237 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| || || ||||| | ||| | |||||| || || || ||| Sbjct 2423975 ATACCACCTCGCAGACGCAAGACCAAATGCAGAGTTGACTCTTTCTGAATGTTGTAGTCA 2423916 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | || || || || ||||| | | ||| || || || Sbjct 2423915 GAAAGGGTACGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGG 2423856 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| |||||| ||||| || || | ||| || | || Sbjct 2423855 GGAATTCCTTCCTTGTCTTGGATTTTAGCCTTTACGTTTTCAATGGTATCGGAAGGCTCC 2423796 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || ||||||||||| | || || | || |||||||| Sbjct 2423795 ACTTCAAGGGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATCTGCAT 2423746 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| || || || || | |||| || || || ||||| ||| Sbjct 2425571 ATACCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCA 2425512 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | || || ||||||||||| | | ||| || ||||| Sbjct 2425511 GAAAGGGTACGCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGG 2425452 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || || || || |||||||| |||| || || | || Sbjct 2425451 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCC 2425392 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || ||||||||||| | || || | || || ||||| Sbjct 2425391 ACTTCAAGAGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 2425342 >seq416 Length=155529 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 49843 AACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCT 49902 || |||| || ||||| || | ||||| || || || ||||| ||||| ||||| | || Sbjct 138920 AAACCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCGCGCT 138861 Query 49903 TTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAA 49962 | || | |||||| |||||||||||||| | ||| |||||||| || || || |||| Sbjct 138860 TCTTCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACTGCAGCAA 138801 Query 49963 ATGCTATTAT 49972 | || || || Sbjct 138800 AGGCAATGAT 138791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984467424190950