Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq33 178 4e-39 seq93 96.9 1e-14 >seq33 Length=1899332 Score = 178 bits (196), Expect = 4e-39 Identities = 690/1068 (65%), Gaps = 21/1068 (2%) Strand=Plus/Minus Query 155312 TTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTC 155371 ||| || ||| || |||||||||| ||||| || | || ||| | | | | || |||| Sbjct 686305 TTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTC 686246 Query 155372 AGAT--GTAAATGCGATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATA 155429 | | |||| | ||| ||| | ||||| || ||||| || || |||||||| Sbjct 686245 ACTTTCGTAA--GGTATACGCATTAAAACAAATGCATCAGCTAATCCTTGGACTCCAATT 686188 Query 155430 CCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTT-TGGGTAAAAATTCAC 155488 |||| || || ||||| ||| | ||| || || | ||| ||| |||| || Sbjct 686187 CCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCT-CTGGCACTGGATAATAATTTAC 686129 Query 155489 ATCAATAATGTTATTTAAATTTGTAACCAATAC-CTTGGTTACGTCTGCTAATTTCACAT 155547 ||||||||| ||||||| ||| | | ||| ||| || || || |||||| Sbjct 686128 ATCAATAATTTTATTTAGATTC-TGAGTTATAGTCTTAGTAACTTCCTTTAATTTGGTGA 686070 Query 155548 AGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATTACATA 155607 | | | ||||||| |||||||| ||||||||| | | |||| || || ||||| || | Sbjct 686069 AATTATATGTTTTGTCCTCATTCACAAACATATTTAAAGCAATTGATGCTAGATTGCACA 686010 Query 155608 CCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTG 155666 | || || | || | | ||||||||||||| ||| ||||| ||| | || Sbjct 686009 CAGCCACTTCATCTGATGAGG-TGTATTCTACAATTTCAGTGCACAAGTTGCTGCATTTA 685951 Query 155667 ATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTAT 155726 || || || || ||||| ||||| ||| || || || | ||| || || || |||||| Sbjct 685950 ATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTATAAAGCATGTAT 685891 Query 155727 GGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT--CTTTAGCCAGAGGTCACGGGCATTAA 155784 || |||||||| || | ||||| || | ||| |||| ||| || | | || | | Sbjct 685890 GGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTT--CCAAAGAACTTGAGCTCTCA 685833 Query 155785 TTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCAC 155844 ||| || | | | || || ||||||||| ||||| | | | ||||||| Sbjct 685832 CTTGTTTCACGAAGCGACCCTCTTTTTCATATTTCTCATACAAAGCTTCAAATTCCTCAC 685773 Query 155845 CGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTAC 155904 | |||| || |||||||| || | || |||||| | | |||| || ||| | Sbjct 685772 CCCAACAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATACTCCAATCTTGATTGC 685713 Query 155905 CGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCT 155964 ||| | | ||| || | ||| ||| | ||||||||| || || | || | Sbjct 685712 TTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGCATAGAATAGCTCTC-TGGCA 685654 Query 155965 TTGACTCCT--CATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATG 156022 |||| || || | ||| ||||| | || | |||||| ||||||| ||| Sbjct 685653 CGGACTTCTTCTTTCCCAGTG-TTCTTTTTCAAATCAAGGAATTCAAATATATCAGCATG 685595 Query 156023 GTGTGGCTCCAGATACATAGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATA 156079 ||| || | || || ||||| || | | || || || || |||||||| Sbjct 685594 CCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACCTCCTTGGTCTACATA 685535 Query 156080 CCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGT 156139 |||||||| || ||| | || | || ||| || | | |||||| || ||||| || Sbjct 685534 TCGAGCAGTGTTGTTGTACACTCTTAACATGGGTACTAGACCATTAGAGACACCATTTGT 685475 Query 156140 TCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGA 156199 || |||| | || || | || || | ||| || || || ||||| | Sbjct 685474 ACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGTGTACATGAAGACCTATCCCACCAGC 685415 Query 156200 CCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATC 156259 | |||||||| | || |||| |||| || | |||| || ||||| |||||| Sbjct 685414 TGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAAATTCCCTCAATGCTATCATC 685355 Query 156260 TTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAG 156319 ||||| || ||| |||| ||| |||||| |||||||| ||| | || ||| || Sbjct 685354 CCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGTGGAGTTGCTGCTGAGAAAAG 685295 Query 156320 TGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGT 156367 || || ||||||| ||||||| || | |||| | || ||| || Sbjct 685294 AGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAGATTGTAGGT 685247 >seq93 Length=1000414 Score = 96.9 bits (106), Expect = 1e-14 Identities = 190/275 (69%), Gaps = 12/275 (4%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| || || ||||| | || ||||| || ||| Sbjct 590236 TCCATAGCCTTTATCAGACGACGCTGGATGTATCCAGTCTCGGCGGTCTTTACGGCAGTA 590295 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT---AGC 302691 ||||| ||||| ||||||| |||||||| ||||| |||| ||| | | | || Sbjct 590296 TCAATAAGACCTTCACGACCTCCCATAGCGTGGAA--ATAGAA-TTCAGATGGAGTAAGA 590352 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTG 302748 || ||| | | ||| | || |||||||| | | |||||| || ||||||| ||| Sbjct 590353 CCGGCAAGATACGAGTTTTCTACGAAACCTCTAGACTCGGGACCGTAATCGTCT---TTG 590409 Query 302749 GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTC 302808 | || || |||| || || || | || | || ||||| || || ||||||||| Sbjct 590410 ATGAAATGCGGCAATGTTCTTTTACGGAATCCAAACGGAATACGTTTACCTTCAACGTTC 590469 Query 302809 TGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || || | || | ||| | ||| |||||||| Sbjct 590470 TGTTGCCCTACACAAGCAATAACCTGGGAAATATT 590504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471798798909989