Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq296 105 8e-17 seq416 104 3e-16 >seq296 Length=269947 Score = 105 bits (116), Expect = 8e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 1573893 GCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTG 1573952 |||||||| || ||| |||||||| || | |||| ||| |||||||| | || | Sbjct 53788 GCGGGTCCTCCGGGCGTCGGCAAGACTACCACCATCCTGTGCCTGGCGCGCGCGCTGCTC 53847 Query 1573953 GGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGAC 1574012 || || ||| | ||| ||||||||||| ||||||||||| |||| |||||| |||| Sbjct 53848 GGGGCCGCCTTCCGCGACGCCGTGCTCGAGCTCAACGCGTCCAACGACCGCGGCATCGAT 53907 Query 1574013 GTCGTGCGCAAGATCATCAAG 1574033 ||||||||||| | |||||| Sbjct 53908 GTCGTGCGCAACAAGATCAAG 53928 >seq416 Length=155529 Score = 104 bits (114), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 13/208 (6%) Strand=Plus/Minus Query 869195 ATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGA-T 869253 |||| || ||||| || | | || ||||| | ||||||||||| | |||||||| | Sbjct 138903 ATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCGCGCTTCTTCATCCAAAAGATT 138844 Query 869254 GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313 | ||| |||||||| ||||| || ||||| || || || |||||| | |||| ||||| Sbjct 138843 GATGCA-AAACTGCCAGAGAAGAATATGCCTTCAACTGCAGCAAAGGCAATGATACGCTC 138785 Query 869314 GGCAAAGGTGTC-GAGGCCCTCCTTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTTT 869369 ||||| ||| | || |||| || |||||||||| |||||||| ||||| | Sbjct 138784 AGCAAATGTGGCTGA-------CTTGCTGGCAATCCACTTCAGGGCCCAGTCAGCCTTCT 138732 Query 869370 TCCTCACCGACGGCACCGTGTCGATGGC 869397 || |||| | |||| || || || || Sbjct 138731 TCTTCACACAGGGCAGGGTTTCAATAGC 138704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107057381511049